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1RY7
Asym. Unit
Info
Asym.Unit (64 KB)
Biol.Unit 1 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE 3 IG FORM OF FGFR3C IN COMPLEX WITH FGF1
Authors
:
S. K. Olsen, O. A. Ibrahimi, A. Raucci, F. Zhang, A. V. Eliseenkova, A. Yayon, C. Basilico, R. J. Linhardt, J. Schlessinger, M. Mohammadi
Date
:
19 Dec 03 (Deposition) - 10 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fgf-Fgfr Complex; Beta Trefoil; Ig Domain, Growth Factor/Growth Factor Receptor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. K. Olsen, O. A. Ibrahimi, A. Raucci, F. Zhang, A. V. Eliseenkova, A. Yayon, C. Basilico, R. J. Linhardt, J. Schlessinger, M. Mohammadi
Insights Into The Molecular Basis For Fibroblast Growth Factor Receptor Autoinhibition And Ligand-Binding Promiscuity.
Proc. Natl. Acad. Sci. Usa V. 101 935 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(7, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_021357 (G21E, chain A, )
2: VAR_042208 (C228R, chain B, )
3: VAR_004148 (R248C, chain B, )
4: VAR_004149 (S249C, chain B, )
5: VAR_004150 (P250R, chain B, )
6: VAR_018388 (E322K, chain B, )
7: VAR_042209 (T338M, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021357
G
21
E
FGF1_HUMAN
Polymorphism
17223632
A
G
21
E
2
UniProt
VAR_042208
C
228
R
FGFR3_HUMAN
Unclassified
---
B
C
228
R
3
UniProt
VAR_004148
R
248
C
FGFR3_HUMAN
Disease (TD1)
---
B
R
248
C
4
UniProt
VAR_004149
S
249
C
FGFR3_HUMAN
Disease (TD1)
---
B
S
249
C
5
UniProt
VAR_004150
P
250
R
FGFR3_HUMAN
Disease (MNKS)
4647924
B
P
250
R
6
UniProt
VAR_018388
E
322
K
FGFR3_HUMAN
Unclassified
---
B
E
322
K
7
UniProt
VAR_042209
T
338
M
FGFR3_HUMAN
Polymorphism
---
B
T
338
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HBGF_FGF (A:86-109)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HBGF_FGF
PS00247
HBGF/FGF family signature.
FGF1_HUMAN
86-109
1
A:86-109
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Exons
(8, 8)
Info
All Exons
Exon 1.5a (B:150-205)
Exon 1.6a (B:206-247)
Exon 1.7b (B:247-310)
Exon 1.9b (B:311-359)
Exon 1.10a (B:359-362)
Exon 2.8b (A:5-57)
Exon 2.9b (A:57-91)
Exon 2.10f (A:92-155)
View:
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All Exon Boundaries
01: Boundary 1.4/1.5a
02: Boundary 1.5a/1.6a
03: Boundary 1.6a/1.7b
04: Boundary 1.7b/1.9b
05: Boundary 1.9b/1.10a
06: Boundary 1.10a/1.10d
07: Boundary 2.3/2.8b
08: Boundary 2.8b/2.9b
09: Boundary 2.9b/2.10f
10: Boundary 2.10f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000260795
2a
ENSE00001596390
chr4:
1795560-1795770
211
FGFR3_HUMAN
1-37
37
0
-
-
1.3
ENST00000260795
3
ENSE00001164902
chr4:
1800981-1801250
270
FGFR3_HUMAN
37-127
91
0
-
-
1.4
ENST00000260795
4
ENSE00000778155
chr4:
1801474-1801539
66
FGFR3_HUMAN
127-149
23
0
-
-
1.5a
ENST00000260795
5a
ENSE00000933877
chr4:
1803094-1803263
170
FGFR3_HUMAN
149-205
57
1
B:150-205
56
1.6a
ENST00000260795
6a
ENSE00000778157
chr4:
1803347-1803470
124
FGFR3_HUMAN
206-247
42
1
B:206-247
42
1.7b
ENST00000260795
7b
ENSE00000933879
chr4:
1803562-1803752
191
FGFR3_HUMAN
247-310
64
1
B:247-310
64
1.9b
ENST00000260795
9b
ENSE00000778159
chr4:
1805419-1805563
145
FGFR3_HUMAN
311-359
49
1
B:311-359
49
1.10a
ENST00000260795
10a
ENSE00000778160
chr4:
1806057-1806247
191
FGFR3_HUMAN
359-422
64
1
B:359-362
4
1.10d
ENST00000260795
10d
ENSE00000843002
chr4:
1806551-1806696
146
FGFR3_HUMAN
423-471
49
0
-
-
1.11
ENST00000260795
11
ENSE00001660253
chr4:
1807082-1807203
122
FGFR3_HUMAN
471-512
42
0
-
-
1.12
ENST00000260795
12
ENSE00000778164
chr4:
1807286-1807396
111
FGFR3_HUMAN
512-549
38
0
-
-
1.13b
ENST00000260795
13b
ENSE00001768214
chr4:
1807477-1807667
191
FGFR3_HUMAN
549-612
64
0
-
-
1.14
ENST00000260795
14
ENSE00001604810
chr4:
1807778-1807900
123
FGFR3_HUMAN
613-653
41
0
-
-
1.15
ENST00000260795
15
ENSE00001676483
chr4:
1807984-1808054
71
FGFR3_HUMAN
654-677
24
0
-
-
1.16
ENST00000260795
16
ENSE00001745037
chr4:
1808273-1808410
138
FGFR3_HUMAN
677-723
47
0
-
-
1.17
ENST00000260795
17
ENSE00001740590
chr4:
1808556-1808661
106
FGFR3_HUMAN
723-758
36
0
-
-
1.18c
ENST00000260795
18c
ENSE00001769683
chr4:
1808843-1810598
1756
FGFR3_HUMAN
759-806
48
0
-
-
2.3
ENST00000378046
3
ENSE00001476010
chr5:
142065237-142065079
159
FGF1_HUMAN
-
0
0
-
-
2.8b
ENST00000378046
8b
ENSE00002155500
chr5:
141993726-141993524
203
FGF1_HUMAN
1-57
57
1
A:5-57
53
2.9b
ENST00000378046
9b
ENSE00000766692
chr5:
141980370-141980267
104
FGF1_HUMAN
57-91
35
1
A:57-91
35
2.10f
ENST00000378046
10f
ENSE00001476009
chr5:
141975049-141972934
2116
FGF1_HUMAN
92-155
64
1
A:92-155
64
[
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SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1ry7a_ (A:)
2a: SCOP_d1ry7b1 (B:150-248)
2b: SCOP_d1ry7b2 (B:249-362)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-Trefoil
(385)
Superfamily
:
Cytokine
(169)
Family
:
Fibroblast growth factors (FGF)
(120)
Protein domain
:
Acidic FGF (FGF1)
(88)
Human (Homo sapiens) [TaxId: 9606]
(84)
1a
d1ry7a_
A:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Fibroblast growth factor receptor, FGFR
(15)
Human (Homo sapiens), FGFR3c [TaxId: 9606]
(1)
2a
d1ry7b1
B:150-248
2b
d1ry7b2
B:249-362
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1ry7B01 (B:150-247)
1b: CATH_1ry7B02 (B:248-362)
2a: CATH_1ry7A00 (A:5-155)
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(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1ry7B01
B:150-247
1b
1ry7B02
B:248-362
Architecture
:
Trefoil
(289)
Topology
:
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(289)
Homologous Superfamily
:
[code=2.80.10.50, no name defined]
(289)
Human (Homo sapiens)
(131)
2a
1ry7A00
A:5-155
[
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Pfam Domains
(2, 3)
Info
all PFAM domains
1a: PFAM_I_set_1ry7B01 (B:257-356)
1b: PFAM_I_set_1ry7B02 (B:257-356)
2a: PFAM_FGF_1ry7A01 (A:25-148)
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Organisms
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Clan
:
Ig
(577)
Family
:
I-set
(67)
Homo sapiens (Human)
(50)
1a
I-set-1ry7B01
B:257-356
1b
I-set-1ry7B02
B:257-356
Clan
:
Trefoil
(131)
Family
:
FGF
(36)
Homo sapiens (Human)
(34)
2a
FGF-1ry7A01
A:25-148
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