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1RXD
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (29 KB)
Biol.Unit 3 (28 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PROTEIN TYROSINE PHOSPHATASE 4A1
Authors
:
J. P. Sun, A. A. Fedorov, S. C. Almo, Z. Y. Zhang, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
18 Dec 03 (Deposition) - 28 Dec 04 (Release) - 01 Apr 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Structural Genomics, Nysgxrc, Unknown Function, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Almo, J. B. Bonanno, J. M. Sauder, S. Emtage, T. P. Dilorenzo, V. Malashkevich, S. R. Wasserman, S. Swaminathan, S. Eswaramoorthy, R. Agarwal, D. Kumaran, M. Madegowda, S. Ragumani, Y. Patskovsky, J. Alvarado, U. A. Ramagopal, J. Faber-Barata, M. R. Chance, A. Sali, A. Fiser, Z. Y. Zhang, D. S. Lawrence, S. K. Burley
Structural Genomics Of Protein Phosphatases.
J. Struct. Funct. Genom. V. 8 121 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 9)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_2 (A:81-147,B:81-147,C:81-147)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
TP4A1_HUMAN
82-148
3
A:81-147
B:81-147
C:81-147
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Exons
(5, 15)
Info
All Exons
Exon 1.5c (A:8-34 | B:8-34 | C:8-34)
Exon 1.6 (A:35-65 | B:35-65 | C:35-65)
Exon 1.7 (A:66-109 (gaps) | B:66-109 | C:66-...)
Exon 1.8 (A:109-134 | B:109-134 | C:109-134)
Exon 1.9c (A:134-159 | B:134-159 | C:134-159)
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All Exon Boundaries
1: Boundary 1.3a/1.5c
2: Boundary 1.5c/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9c
6: Boundary 1.9c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000370651
3a
ENSE00001860369
chr6:
64282394-64282624
231
TP4A1_HUMAN
-
0
0
-
-
1.5c
ENST00000370651
5c
ENSE00000999818
chr6:
64286341-64286890
550
TP4A1_HUMAN
1-35
35
3
A:8-34
B:8-34
C:8-34
27
27
27
1.6
ENST00000370651
6
ENSE00000757682
chr6:
64288342-64288434
93
TP4A1_HUMAN
36-66
31
3
A:35-65
B:35-65
C:35-65
31
31
31
1.7
ENST00000370651
7
ENSE00000757684
chr6:
64288803-64288933
131
TP4A1_HUMAN
67-110
44
3
A:66-109 (gaps)
B:66-109
C:66-109 (gaps)
44
44
44
1.8
ENST00000370651
8
ENSE00000757686
chr6:
64289162-64289236
75
TP4A1_HUMAN
110-135
26
3
A:109-134
B:109-134
C:109-134
26
26
26
1.9c
ENST00000370651
9c
ENSE00001453229
chr6:
64289962-64293492
3531
TP4A1_HUMAN
135-173
39
3
A:134-159
B:134-159
C:134-159
26
26
26
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1rxda_ (A:)
1b: SCOP_d1rxdb_ (B:)
1c: SCOP_d1rxdc_ (C:)
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)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
Dual specificity phosphatase-like
(27)
Protein domain
:
Protein tyrosine phosphatase type IVa
(5)
Human (Homo sapiens), pr-1 [TaxId: 9606]
(1)
1a
d1rxda_
A:
1b
d1rxdb_
B:
1c
d1rxdc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1rxdB00 (B:8-159)
1b: CATH_1rxdA00 (A:8-159)
1c: CATH_1rxdC00 (C:8-159)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
1rxdB00
B:8-159
1b
1rxdA00
A:8-159
1c
1rxdC00
C:8-159
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Y_phosphatase_1rxdC01 (C:53-151)
1b: PFAM_Y_phosphatase_1rxdC02 (C:53-151)
1c: PFAM_Y_phosphatase_1rxdC03 (C:53-151)
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)
Clan
:
Phosphatase
(121)
Family
:
Y_phosphatase
(93)
Homo sapiens (Human)
(82)
1a
Y_phosphatase-1rxdC01
C:53-151
1b
Y_phosphatase-1rxdC02
C:53-151
1c
Y_phosphatase-1rxdC03
C:53-151
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Asym.Unit (84 KB)
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