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1RWY
Asym. Unit
Info
Asym.Unit (124 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 2 (42 KB)
Biol.Unit 3 (41 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF RAT ALPHA-PARVALBUMIN AT 1.05 RESOLUTION
Authors
:
C. A. Bottoms, J. P. Schuermann, S. Agah, M. T. Henzl, J. J. Tanner
Date
:
17 Dec 03 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.05
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ef-Hand, Calcium-Binding, Calcium-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Bottoms, J. P. Schuermann, S. Agah, M. T. Henzl, J. J. Tanner
Crystal Structure Of Rat Alpha-Parvalbumin At 1. 05 Resolution
Protein Sci. V. 13 1724 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: AMMONIUM ION (NH4a)
4a: TETRAETHYLENE GLYCOL (PG4a)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
1
Ligand/Ion
ACETIC ACID
2
CA
6
Ligand/Ion
CALCIUM ION
3
NH4
1
Ligand/Ion
AMMONIUM ION
4
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
5
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: CD1 (AUTHOR)
15: CD2 (AUTHOR)
16: CD3 (AUTHOR)
17: EF1 (AUTHOR)
18: EF2 (AUTHOR)
19: EF3 (AUTHOR)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:51 , ASP A:53 , SER A:55 , PHE A:57 , GLU A:59 , GLU A:62
BINDING SITE FOR RESIDUE CA A 421
02
AC2
SOFTWARE
ASP A:90 , ASP A:92 , ASP A:94 , LYS A:96 , GLU A:101 , HOH A:535
BINDING SITE FOR RESIDUE CA A 422
03
AC3
SOFTWARE
ASP B:51 , ASP B:53 , SER B:55 , PHE B:57 , GLU B:59 , GLU B:62
BINDING SITE FOR RESIDUE CA B 423
04
AC4
SOFTWARE
ASP B:90 , ASP B:92 , ASP B:94 , LYS B:96 , GLU B:101 , HOH B:523
BINDING SITE FOR RESIDUE CA B 424
05
AC5
SOFTWARE
ASP C:51 , ASP C:53 , SER C:55 , PHE C:57 , GLU C:59 , GLU C:62
BINDING SITE FOR RESIDUE CA C 425
06
AC6
SOFTWARE
ASP C:90 , ASP C:92 , ASP C:94 , LYS C:96 , GLU C:101 , HOH C:534
BINDING SITE FOR RESIDUE CA C 426
07
AC7
SOFTWARE
LYS A:12 , HIS A:26 , THR A:84 , ALA A:88 , HOH A:475 , HOH A:497 , HOH A:552
BINDING SITE FOR RESIDUE SO4 A 431
08
AC8
SOFTWARE
LYS A:37 , LYS B:12 , HIS B:48 , HOH B:503 , HOH B:511 , HOH B:546
BINDING SITE FOR RESIDUE SO4 B 432
09
AC9
SOFTWARE
LYS A:36 , ALA A:107 , HOH A:462 , LYS B:54 , HOH B:453
BINDING SITE FOR RESIDUE SO4 B 433
10
BC1
SOFTWARE
LYS B:28 , HOH B:459 , HOH B:532 , SER C:78 , ALA C:79
BINDING SITE FOR RESIDUE SO4 B 436
11
BC2
SOFTWARE
ASP A:53 , GLU A:59 , ASP A:61 , THR C:3 , LEU C:6
BINDING SITE FOR RESIDUE NH4 C 461
12
BC3
SOFTWARE
GLU B:108 , LYS C:52 , ASP C:61 , SER C:65 , ASP C:92 , HOH C:477 , HOH C:548
BINDING SITE FOR RESIDUE PG4 C 441
13
BC4
SOFTWARE
LYS A:96 , HOH A:571 , LYS B:83 , SER C:1 , HOH C:486 , HOH C:555
BINDING SITE FOR RESIDUE ACY A 451
14
CD1
AUTHOR
ASP A:51 , ASP A:53 , SER A:55 , PHE A:57 , GLU A:59 , GLU A:62
NULL
15
CD2
AUTHOR
ASP B:51 , ASP B:53 , SER B:55 , PHE B:57 , GLU B:59 , GLU B:62
NULL
16
CD3
AUTHOR
ASP C:51 , ASP C:53 , SER C:55 , PHE C:57 , GLU C:59 , GLU C:62
NULL
17
EF1
AUTHOR
ASP A:90 , ASP A:92 , ASP A:94 , LYS A:96 , HOH A:535 , GLU A:101
NULL
18
EF2
AUTHOR
ASP B:90 , ASP B:92 , ASP B:94 , LYS B:96 , HOH B:523 , GLU B:101
NULL
19
EF3
AUTHOR
ASP C:90 , ASP C:92 , ASP C:94 , LYS C:96 , HOH C:534 , GLU C:101
NULL
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:38-73,B:38-73,C:38-73|A:77-109,B...)
2: EF_HAND_1 (A:51-63,B:51-63,C:51-63|A:90-102,B...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
PRVA_RAT
39-74
78-110
6
A:38-73
B:38-73
C:38-73
A:77-109
B:77-109
C:77-109
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
PRVA_RAT
52-64
91-103
6
A:51-63
B:51-63
C:51-63
A:90-102
B:90-102
C:90-102
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1rwya_ (A:)
1b: SCOP_d1rwyb_ (B:)
1c: SCOP_d1rwyc_ (C:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Parvalbumin
(36)
Protein domain
:
Parvalbumin
(30)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(6)
1a
d1rwya_
A:
1b
d1rwyb_
B:
1c
d1rwyc_
C:
[
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]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1rwyA00 (A:1-109)
1b: CATH_1rwyB00 (B:1-109)
1c: CATH_1rwyC00 (C:1-109)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Norway rat (Rattus norvegicus)
(37)
1a
1rwyA00
A:1-109
1b
1rwyB00
B:1-109
1c
1rwyC00
C:1-109
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_EF_hand_5_1rwyC01 (C:3-106)
1b: PFAM_EF_hand_5_1rwyC02 (C:3-106)
1c: PFAM_EF_hand_5_1rwyC03 (C:3-106)
2a: PFAM_EF_hand_6_1rwyC04 (C:63-108)
2b: PFAM_EF_hand_6_1rwyC05 (C:63-108)
2c: PFAM_EF_hand_6_1rwyC06 (C:63-108)
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Clans
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)
(
)
Families
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(
)
Organisms
(
)
(
)
Clan
:
EF_hand
(270)
Family
:
EF_hand_5
(126)
Rattus norvegicus (Rat)
(9)
1a
EF_hand_5-1rwyC01
C:3-106
1b
EF_hand_5-1rwyC02
C:3-106
1c
EF_hand_5-1rwyC03
C:3-106
Family
:
EF_hand_6
(75)
Rattus norvegicus (Rat)
(9)
2a
EF_hand_6-1rwyC04
C:63-108
2b
EF_hand_6-1rwyC05
C:63-108
2c
EF_hand_6-1rwyC06
C:63-108
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