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1RWT
Biol. Unit 2
Info
Asym.Unit (689 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (189 KB)
Biol.Unit 3 (189 KB)
Biol.Unit 4 (189 KB)
Biol.Unit 5, α-C (3.4 MB)
Biol.Unit 5 (3.4 MB)
Biol.Unit 6 (189 KB)
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Title
:
CRYSTAL STRUCTURE OF SPINACH MAJOR LIGHT-HARVESTING COMPLEX AT 2.72 ANGSTROM RESOLUTION
Authors
:
Z. Liu, H. Yan, K. Wang, T. Kuang, J. Zhang, L. Gui, X. An, W. Chang
Date
:
17 Dec 03 (Deposition) - 30 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.72
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A (1x)
Biol. Unit 2: B,F,G (1x)
Biol. Unit 3: C,E,H (1x)
Biol. Unit 4: D,I,J (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H,I,J (6x)
Biol. Unit 6: A (3x)
Keywords
:
Light-Harvesting Complex, Membrane Protein, Plant, Photosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Liu, H. Yan, K. Wang, T. Kuang, J. Zhang, L. Gui, X. An, W. Chang
Crystal Structure Of Spinach Major Light-Harvesting Complex At 2. 72 A Resolution
Nature V. 428 287 2004
[
close entry info
]
Hetero Components
(8, 63)
Info
All Hetero Components
1a: B-NONYLGLUCOSIDE (BNGa)
1b: B-NONYLGLUCOSIDE (BNGb)
1c: B-NONYLGLUCOSIDE (BNGc)
1d: B-NONYLGLUCOSIDE (BNGd)
1e: B-NONYLGLUCOSIDE (BNGe)
1f: B-NONYLGLUCOSIDE (BNGf)
1g: B-NONYLGLUCOSIDE (BNGg)
1h: B-NONYLGLUCOSIDE (BNGh)
1i: B-NONYLGLUCOSIDE (BNGi)
1j: B-NONYLGLUCOSIDE (BNGj)
2a: CHLOROPHYLL B (CHLa)
2aa: CHLOROPHYLL B (CHLaa)
2ab: CHLOROPHYLL B (CHLab)
2ac: CHLOROPHYLL B (CHLac)
2ad: CHLOROPHYLL B (CHLad)
2ae: CHLOROPHYLL B (CHLae)
2af: CHLOROPHYLL B (CHLaf)
2ag: CHLOROPHYLL B (CHLag)
2ah: CHLOROPHYLL B (CHLah)
2ai: CHLOROPHYLL B (CHLai)
2aj: CHLOROPHYLL B (CHLaj)
2ak: CHLOROPHYLL B (CHLak)
2al: CHLOROPHYLL B (CHLal)
2am: CHLOROPHYLL B (CHLam)
2an: CHLOROPHYLL B (CHLan)
2ao: CHLOROPHYLL B (CHLao)
2ap: CHLOROPHYLL B (CHLap)
2aq: CHLOROPHYLL B (CHLaq)
2ar: CHLOROPHYLL B (CHLar)
2as: CHLOROPHYLL B (CHLas)
2at: CHLOROPHYLL B (CHLat)
2au: CHLOROPHYLL B (CHLau)
2av: CHLOROPHYLL B (CHLav)
2aw: CHLOROPHYLL B (CHLaw)
2ax: CHLOROPHYLL B (CHLax)
2ay: CHLOROPHYLL B (CHLay)
2az: CHLOROPHYLL B (CHLaz)
2b: CHLOROPHYLL B (CHLb)
2ba: CHLOROPHYLL B (CHLba)
2bb: CHLOROPHYLL B (CHLbb)
2bc: CHLOROPHYLL B (CHLbc)
2bd: CHLOROPHYLL B (CHLbd)
2be: CHLOROPHYLL B (CHLbe)
2bf: CHLOROPHYLL B (CHLbf)
2bg: CHLOROPHYLL B (CHLbg)
2bh: CHLOROPHYLL B (CHLbh)
2c: CHLOROPHYLL B (CHLc)
2d: CHLOROPHYLL B (CHLd)
2e: CHLOROPHYLL B (CHLe)
2f: CHLOROPHYLL B (CHLf)
2g: CHLOROPHYLL B (CHLg)
2h: CHLOROPHYLL B (CHLh)
2i: CHLOROPHYLL B (CHLi)
2j: CHLOROPHYLL B (CHLj)
2k: CHLOROPHYLL B (CHLk)
2l: CHLOROPHYLL B (CHLl)
2m: CHLOROPHYLL B (CHLm)
2n: CHLOROPHYLL B (CHLn)
2o: CHLOROPHYLL B (CHLo)
2p: CHLOROPHYLL B (CHLp)
2q: CHLOROPHYLL B (CHLq)
2r: CHLOROPHYLL B (CHLr)
2s: CHLOROPHYLL B (CHLs)
2t: CHLOROPHYLL B (CHLt)
2u: CHLOROPHYLL B (CHLu)
2v: CHLOROPHYLL B (CHLv)
2w: CHLOROPHYLL B (CHLw)
2x: CHLOROPHYLL B (CHLx)
2y: CHLOROPHYLL B (CHLy)
2z: CHLOROPHYLL B (CHLz)
3a: CHLOROPHYLL A (CLAa)
3aa: CHLOROPHYLL A (CLAaa)
3ab: CHLOROPHYLL A (CLAab)
3ac: CHLOROPHYLL A (CLAac)
3ad: CHLOROPHYLL A (CLAad)
3ae: CHLOROPHYLL A (CLAae)
3af: CHLOROPHYLL A (CLAaf)
3ag: CHLOROPHYLL A (CLAag)
3ah: CHLOROPHYLL A (CLAah)
3ai: CHLOROPHYLL A (CLAai)
3aj: CHLOROPHYLL A (CLAaj)
3ak: CHLOROPHYLL A (CLAak)
3al: CHLOROPHYLL A (CLAal)
3am: CHLOROPHYLL A (CLAam)
3an: CHLOROPHYLL A (CLAan)
3ao: CHLOROPHYLL A (CLAao)
3ap: CHLOROPHYLL A (CLAap)
3aq: CHLOROPHYLL A (CLAaq)
3ar: CHLOROPHYLL A (CLAar)
3as: CHLOROPHYLL A (CLAas)
3at: CHLOROPHYLL A (CLAat)
3au: CHLOROPHYLL A (CLAau)
3av: CHLOROPHYLL A (CLAav)
3aw: CHLOROPHYLL A (CLAaw)
3ax: CHLOROPHYLL A (CLAax)
3ay: CHLOROPHYLL A (CLAay)
3az: CHLOROPHYLL A (CLAaz)
3b: CHLOROPHYLL A (CLAb)
3ba: CHLOROPHYLL A (CLAba)
3bb: CHLOROPHYLL A (CLAbb)
3bc: CHLOROPHYLL A (CLAbc)
3bd: CHLOROPHYLL A (CLAbd)
3be: CHLOROPHYLL A (CLAbe)
3bf: CHLOROPHYLL A (CLAbf)
3bg: CHLOROPHYLL A (CLAbg)
3bh: CHLOROPHYLL A (CLAbh)
3bi: CHLOROPHYLL A (CLAbi)
3bj: CHLOROPHYLL A (CLAbj)
3bk: CHLOROPHYLL A (CLAbk)
3bl: CHLOROPHYLL A (CLAbl)
3bm: CHLOROPHYLL A (CLAbm)
3bn: CHLOROPHYLL A (CLAbn)
3bo: CHLOROPHYLL A (CLAbo)
3bp: CHLOROPHYLL A (CLAbp)
3bq: CHLOROPHYLL A (CLAbq)
3br: CHLOROPHYLL A (CLAbr)
3bs: CHLOROPHYLL A (CLAbs)
3bt: CHLOROPHYLL A (CLAbt)
3bu: CHLOROPHYLL A (CLAbu)
3bv: CHLOROPHYLL A (CLAbv)
3bw: CHLOROPHYLL A (CLAbw)
3bx: CHLOROPHYLL A (CLAbx)
3by: CHLOROPHYLL A (CLAby)
3bz: CHLOROPHYLL A (CLAbz)
3c: CHLOROPHYLL A (CLAc)
3ca: CHLOROPHYLL A (CLAca)
3cb: CHLOROPHYLL A (CLAcb)
3d: CHLOROPHYLL A (CLAd)
3e: CHLOROPHYLL A (CLAe)
3f: CHLOROPHYLL A (CLAf)
3g: CHLOROPHYLL A (CLAg)
3h: CHLOROPHYLL A (CLAh)
3i: CHLOROPHYLL A (CLAi)
3j: CHLOROPHYLL A (CLAj)
3k: CHLOROPHYLL A (CLAk)
3l: CHLOROPHYLL A (CLAl)
3m: CHLOROPHYLL A (CLAm)
3n: CHLOROPHYLL A (CLAn)
3o: CHLOROPHYLL A (CLAo)
3p: CHLOROPHYLL A (CLAp)
3q: CHLOROPHYLL A (CLAq)
3r: CHLOROPHYLL A (CLAr)
3s: CHLOROPHYLL A (CLAs)
3t: CHLOROPHYLL A (CLAt)
3u: CHLOROPHYLL A (CLAu)
3v: CHLOROPHYLL A (CLAv)
3w: CHLOROPHYLL A (CLAw)
3x: CHLOROPHYLL A (CLAx)
3y: CHLOROPHYLL A (CLAy)
3z: CHLOROPHYLL A (CLAz)
4a: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDa)
4b: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDb)
4c: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDc)
4d: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDd)
4e: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDe)
4f: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDf)
4g: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDg)
4h: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDh)
4i: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDi)
4j: DIGALACTOSYL DIACYL GLYCEROL (DGDG... (DGDj)
5a: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGa)
5b: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGb)
5c: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGc)
5d: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGd)
5e: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGe)
5f: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGf)
5g: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGg)
5h: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGh)
5i: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGi)
5j: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCE... (LHGj)
6a: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTa)
6b: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTb)
6c: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTc)
6d: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTd)
6e: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTe)
6f: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTf)
6g: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTg)
6h: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTh)
6i: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTi)
6j: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTj)
6k: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTk)
6l: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTl)
6m: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTm)
6n: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTn)
6o: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTo)
6p: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTp)
6q: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTq)
6r: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTr)
6s: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTs)
6t: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHY... (LUTt)
7a: SODIUM ION (NAa)
8a: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXa)
8b: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXb)
8c: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXc)
8d: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXd)
8e: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXe)
8f: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXf)
8g: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXg)
8h: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXh)
8i: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXi)
8j: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15... (NEXj)
9a: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATa)
9b: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATb)
9c: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATc)
9d: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATd)
9e: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATe)
9f: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATf)
9g: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATg)
9h: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATh)
9i: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATi)
9j: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-D... (XATj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BNG
3
Ligand/Ion
B-NONYLGLUCOSIDE
2
CHL
18
Ligand/Ion
CHLOROPHYLL B
3
CLA
24
Ligand/Ion
CHLOROPHYLL A
4
DGD
3
Ligand/Ion
DIGALACTOSYL DIACYL GLYCEROL (DGDG)
5
LHG
3
Ligand/Ion
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
6
LUT
6
Ligand/Ion
(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
7
NA
-1
Ligand/Ion
SODIUM ION
8
NEX
3
Ligand/Ion
(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL
9
XAT
3
Ligand/Ion
(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'-TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL
[
close Hetero Component info
]
Sites
(67, 67)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: DC5 (SOFTWARE)
05: DC6 (SOFTWARE)
06: DC7 (SOFTWARE)
07: DC8 (SOFTWARE)
08: DC9 (SOFTWARE)
09: EC1 (SOFTWARE)
10: EC2 (SOFTWARE)
11: EC3 (SOFTWARE)
12: EC4 (SOFTWARE)
13: EC5 (SOFTWARE)
14: EC6 (SOFTWARE)
15: EC7 (SOFTWARE)
16: EC8 (SOFTWARE)
17: EC9 (SOFTWARE)
18: FC1 (SOFTWARE)
19: FC2 (SOFTWARE)
20: FC3 (SOFTWARE)
21: FC4 (SOFTWARE)
22: FC5 (SOFTWARE)
23: FC6 (SOFTWARE)
24: GC3 (SOFTWARE)
25: GC8 (SOFTWARE)
26: MC4 (SOFTWARE)
27: MC5 (SOFTWARE)
28: MC6 (SOFTWARE)
29: MC7 (SOFTWARE)
30: MC8 (SOFTWARE)
31: MC9 (SOFTWARE)
32: NC1 (SOFTWARE)
33: NC2 (SOFTWARE)
34: NC3 (SOFTWARE)
35: NC4 (SOFTWARE)
36: NC5 (SOFTWARE)
37: NC6 (SOFTWARE)
38: NC7 (SOFTWARE)
39: NC8 (SOFTWARE)
40: NC9 (SOFTWARE)
41: OC1 (SOFTWARE)
42: OC2 (SOFTWARE)
43: OC3 (SOFTWARE)
44: OC4 (SOFTWARE)
45: OC5 (SOFTWARE)
46: OC6 (SOFTWARE)
47: OC7 (SOFTWARE)
48: OC8 (SOFTWARE)
49: OC9 (SOFTWARE)
50: PC1 (SOFTWARE)
51: PC2 (SOFTWARE)
52: PC3 (SOFTWARE)
53: PC4 (SOFTWARE)
54: PC5 (SOFTWARE)
55: PC6 (SOFTWARE)
56: PC7 (SOFTWARE)
57: PC8 (SOFTWARE)
58: PC9 (SOFTWARE)
59: QC1 (SOFTWARE)
60: QC2 (SOFTWARE)
61: QC3 (SOFTWARE)
62: QC4 (SOFTWARE)
63: QC5 (SOFTWARE)
64: QC6 (SOFTWARE)
65: QC7 (SOFTWARE)
66: VC8 (SOFTWARE)
67: WC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
CLA B:611 , HOH B:5640 , HOH B:5696
BINDING SITE FOR RESIDUE BNG B 1633
02
AC6
SOFTWARE
CLA F:611
BINDING SITE FOR RESIDUE BNG F 5633
03
AC7
SOFTWARE
CLA G:611
BINDING SITE FOR RESIDUE BNG G 6633
04
DC5
SOFTWARE
MET B:73 , PHE B:161 , ASP B:162 , PRO B:163 , LEU B:164 , ASN B:183 , SER B:190 , PHE B:194 , GLN B:197 , PRO B:205 , CHL B:608 , CLA B:610 , CLA B:612 , CLA B:613
BINDING SITE FOR RESIDUE LUT B 1620
05
DC6
SOFTWARE
TRP B:46 , ASP B:47 , THR B:48 , ALA B:49 , GLY B:75 , GLY B:78 , CYS B:79 , TRP B:97 , ALA B:100 , MET B:188 , CLA B:602 , CLA B:603 , HOH B:5656 , CLA G:603 , CHL G:609
BINDING SITE FOR RESIDUE LUT B 1621
06
DC7
SOFTWARE
ALA B:221 , TRP B:222 , PHE B:224 , ALA B:225 , PHE B:228 , CHL B:601 , CLA B:614 , LHG B:1630 , DGD B:2632 , HOH B:5653 , TRP G:128 , CHL G:607
BINDING SITE FOR RESIDUE XAT B 1622
07
DC8
SOFTWARE
TYR B:112 , ALA B:137 , VAL B:138 , TYR B:141 , CLA B:604 , CHL B:606 , CHL B:608
BINDING SITE FOR RESIDUE NEX B 1623
08
DC9
SOFTWARE
TYR B:44 , LYS B:182 , PHE B:189 , CHL B:601 , CLA B:611 , XAT B:1622 , HOH B:5642
BINDING SITE FOR RESIDUE LHG B 1630
09
EC1
SOFTWARE
ILE B:104 , PHE B:105 , GLN B:122 , SER B:123 , ILE B:124 , ALA B:126 , ALA B:129 , VAL B:132 , CHL B:605 , XAT B:5622 , HOH B:5639 , HOH B:5666 , HOH B:5674 , ASP F:215 , VAL F:217 , ASN F:218 , CLA F:614
BINDING SITE FOR RESIDUE DGD B 1632
10
EC2
SOFTWARE
VAL B:22 , LYS B:23 , TYR B:24 , LEU B:25 , GLY B:26 , PRO B:27 , TRP B:46 , CLA B:602 , XAT B:1622 , LHG B:1630 , GLN G:131 , GLY G:136 , CHL G:607 , CHL G:609
BINDING SITE FOR RESIDUE CHL B 601
11
EC3
SOFTWARE
LEU B:36 , PRO B:41 , GLY B:42 , ASP B:43 , TYR B:44 , GLY B:45 , TRP B:46 , ASP B:47 , LEU B:51 , SER B:52 , ASN B:61 , ARG B:62 , LEU B:64 , GLU B:65 , HIS B:68 , ARG B:185 , MET B:188 , PHE B:189 , PHE B:192 , CHL B:601 , CLA B:603 , LUT B:1621 , CLA G:603 , CHL G:609
BINDING SITE FOR RESIDUE CLA B 602
12
EC4
SOFTWARE
HIS B:68 , PHE B:195 , CLA B:602 , CHL B:607 , CHL B:609 , LUT B:1621 , HOH B:5695 , LEU F:51 , CLA F:602 , LUT F:5621 , LHG F:5630 , HOH F:6659
BINDING SITE FOR RESIDUE CLA B 603
13
EC5
SOFTWARE
LEU B:77 , GLY B:78 , PHE B:92 , GLU B:94 , GLN B:103 , LEU B:110 , TYR B:112 , LEU B:113 , VAL B:119 , CHL B:606 , NEX B:1623 , HOH B:5631
BINDING SITE FOR RESIDUE CLA B 604
14
EC6
SOFTWARE
SER B:117 , LEU B:118 , VAL B:119 , HIS B:120 , ALA B:121 , GLN B:122 , SER B:123 , CHL B:606 , DGD B:1632 , LEU F:213
BINDING SITE FOR RESIDUE CHL B 605
15
EC7
SOFTWARE
TRP B:71 , GLY B:101 , ALA B:121 , ILE B:127 , CYS B:130 , GLN B:131 , CLA B:604 , CHL B:605 , CHL B:607 , NEX B:1623 , HOH B:5630 , HOH B:5632 , HOH B:5652
BINDING SITE FOR RESIDUE CHL B 606
16
EC8
SOFTWARE
TRP B:97 , PHE B:98 , LYS B:99 , GLY B:101 , SER B:102 , PHE B:105 , GLN B:131 , PHE B:195 , CLA B:603 , CHL B:606 , XAT B:5622 , HOH B:5630 , HOH B:5659 , TRP F:222 , ALA F:225 , THR F:226 , PHE F:228 , VAL F:229 , PRO F:230 , CHL F:601
BINDING SITE FOR RESIDUE CHL B 607
17
EC9
SOFTWARE
ARG B:70 , TRP B:71 , VAL B:138 , TYR B:141 , ARG B:142 , GLY B:146 , PRO B:147 , LEU B:148 , GLY B:149 , PRO B:154 , PRO B:157 , SER B:160 , PHE B:161 , CLA B:610 , LUT B:1620 , NEX B:1623 , HOH B:5624 , HOH B:5629 , HOH B:5688
BINDING SITE FOR RESIDUE CHL B 608
18
FC1
SOFTWARE
GLU B:63 , LEU B:64 , ILE B:67 , HIS B:68 , TRP B:71 , GLN B:131 , VAL B:132 , MET B:135 , GLY B:136 , GLU B:139 , ARG B:142 , ILE B:143 , PHE B:192 , VAL B:196 , ILE B:199 , CLA B:603 , TRP F:46 , THR F:48 , CHL F:601 , LUT F:5621
BINDING SITE FOR RESIDUE CHL B 609
19
FC2
SOFTWARE
ARG B:70 , MET B:73 , TYR B:156 , PRO B:157 , GLY B:158 , PHE B:161 , LEU B:166 , PHE B:173 , LEU B:176 , LYS B:179 , GLU B:180 , CHL B:608 , LUT B:1620
BINDING SITE FOR RESIDUE CLA B 610
20
FC3
SOFTWARE
TRP B:16 , GLU B:175 , LYS B:179 , LYS B:182 , ASN B:183 , CLA B:612 , LHG B:1630 , BNG B:1633
BINDING SITE FOR RESIDUE CLA B 611
21
FC4
SOFTWARE
LYS B:179 , ASN B:183 , CLA B:611 , LUT B:1620
BINDING SITE FOR RESIDUE CLA B 612
22
FC5
SOFTWARE
PHE B:189 , GLY B:193 , GLN B:197 , THR B:201 , ASN B:208 , HIS B:212 , ASN B:220 , ALA B:221 , PHE B:224 , CLA B:614 , LUT B:1620
BINDING SITE FOR RESIDUE CLA B 613
23
FC6
SOFTWARE
HIS B:212 , PRO B:216 , ASN B:220 , TRP B:222 , CLA B:613 , XAT B:1622 , DGD B:2632 , HOH B:5633 , LEU G:125
BINDING SITE FOR RESIDUE CLA B 614
24
GC3
SOFTWARE
ASP B:215 , VAL B:217 , ASN B:218 , CLA B:614 , XAT B:1622 , HOH B:5680 , HOH B:5681 , HOH B:5682 , ILE C:104 , PHE C:105 , GLN C:122 , SER C:123 , ILE C:124 , ALA C:126 , CHL C:605 , ALA G:129 , ASN H:218
BINDING SITE FOR RESIDUE DGD B 2632
25
GC8
SOFTWARE
LEU B:213 , DGD B:2632 , PRO C:116 , SER C:117 , LEU C:118 , VAL C:119 , HIS C:120 , ALA C:121 , GLN C:122 , SER C:123 , CHL C:606
BINDING SITE FOR RESIDUE CHL C 605
26
MC4
SOFTWARE
MET F:73 , PHE F:161 , ASP F:162 , PRO F:163 , LEU F:164 , ASN F:183 , SER F:190 , PHE F:194 , GLN F:197 , PRO F:205 , CHL F:608 , CLA F:610 , CLA F:612 , CLA F:613
BINDING SITE FOR RESIDUE LUT F 5620
27
MC5
SOFTWARE
CLA B:603 , CHL B:609 , TRP F:46 , ASP F:47 , THR F:48 , ALA F:49 , GLY F:75 , GLY F:78 , CYS F:79 , TRP F:97 , ALA F:100 , MET F:188 , MET F:191 , CLA F:602 , CLA F:603 , HOH F:6654
BINDING SITE FOR RESIDUE LUT F 5621
28
MC6
SOFTWARE
TRP B:128 , CHL B:607 , DGD B:1632 , HOH B:5683 , ALA F:221 , TRP F:222 , ALA F:225 , PHE F:228 , CHL F:601 , CLA F:614 , LHG F:5630
BINDING SITE FOR RESIDUE XAT B 5622
29
MC7
SOFTWARE
TYR F:112 , ALA F:137 , VAL F:138 , TYR F:141 , CLA F:604 , CHL F:606
BINDING SITE FOR RESIDUE NEX F 5623
30
MC8
SOFTWARE
CLA B:603 , XAT B:5622 , TYR F:44 , LYS F:182 , ARG F:185 , PHE F:189 , CHL F:601 , CLA F:611 , HOH F:6641
BINDING SITE FOR RESIDUE LHG F 5630
31
MC9
SOFTWARE
ASP D:215 , VAL D:217 , ASN D:218 , CLA D:614 , HOH D:8628 , HOH D:8680 , HOH D:8681 , HOH D:8682 , HOH D:8683 , HOH D:8696 , ILE F:104 , PHE F:105 , GLN F:122 , SER F:123 , ILE F:124 , ALA F:126 , CHL F:605 , ASN G:218
BINDING SITE FOR RESIDUE DGD D 5632
32
NC1
SOFTWARE
CHL B:607 , CHL B:609 , XAT B:5622 , VAL F:22 , LYS F:23 , TYR F:24 , LEU F:25 , GLY F:26 , PRO F:27 , TYR F:44 , CLA F:602 , LHG F:5630
BINDING SITE FOR RESIDUE CHL F 601
33
NC2
SOFTWARE
CLA B:603 , LEU F:36 , PRO F:41 , GLY F:42 , ASP F:43 , TYR F:44 , GLY F:45 , TRP F:46 , ASP F:47 , LEU F:51 , SER F:52 , ASN F:61 , ARG F:62 , GLU F:65 , HIS F:68 , ARG F:185 , MET F:188 , PHE F:189 , CHL F:601 , CLA F:603 , LUT F:5621
BINDING SITE FOR RESIDUE CLA F 602
34
NC3
SOFTWARE
HIS F:68 , PHE F:195 , CLA F:602 , CHL F:609 , LUT F:5621 , HOH F:6686 , LEU G:51 , CLA G:602 , LUT G:6621 , HOH G:9669
BINDING SITE FOR RESIDUE CLA F 603
35
NC4
SOFTWARE
LEU F:77 , GLY F:78 , PHE F:92 , GLU F:94 , GLN F:103 , LEU F:110 , TYR F:112 , LEU F:113 , VAL F:119 , CHL F:606 , NEX F:5623 , HOH F:6631
BINDING SITE FOR RESIDUE CLA F 604
36
NC5
SOFTWARE
LEU D:213 , DGD D:5632 , PRO F:116 , SER F:117 , LEU F:118 , VAL F:119 , HIS F:120 , GLN F:122 , SER F:123 , CHL F:606
BINDING SITE FOR RESIDUE CHL F 605
37
NC6
SOFTWARE
TRP F:71 , GLY F:101 , VAL F:119 , ALA F:121 , ILE F:127 , CYS F:130 , GLN F:131 , LEU F:134 , CLA F:604 , CHL F:605 , CHL F:607 , NEX F:5623 , HOH F:6630 , HOH F:6632 , HOH F:6651
BINDING SITE FOR RESIDUE CHL F 606
38
NC7
SOFTWARE
TRP F:97 , PHE F:98 , LYS F:99 , GLY F:101 , SER F:102 , PHE F:105 , GLN F:131 , PHE F:195 , CHL F:606 , XAT F:6622 , HOH F:6630 , HOH F:6656 , TRP G:222 , ALA G:225 , THR G:226 , PHE G:228 , VAL G:229 , PRO G:230 , CHL G:601
BINDING SITE FOR RESIDUE CHL F 607
39
NC8
SOFTWARE
ILE F:67 , ARG F:70 , TRP F:71 , VAL F:138 , TYR F:141 , ARG F:142 , GLY F:146 , PRO F:147 , LEU F:148 , GLY F:149 , PRO F:154 , PRO F:157 , SER F:160 , PHE F:161 , PRO F:163 , CLA F:610 , LUT F:5620 , HOH F:6624 , HOH F:6629
BINDING SITE FOR RESIDUE CHL F 608
40
NC9
SOFTWARE
GLU F:63 , LEU F:64 , ILE F:67 , HIS F:68 , TRP F:71 , GLN F:131 , MET F:135 , GLY F:136 , GLU F:139 , ARG F:142 , ILE F:143 , PHE F:192 , ILE F:199 , CLA F:603 , TRP G:46 , THR G:48 , CHL G:601
BINDING SITE FOR RESIDUE CHL F 609
41
OC1
SOFTWARE
ARG F:70 , MET F:73 , TYR F:156 , PRO F:157 , GLY F:158 , PHE F:161 , LEU F:166 , PHE F:173 , LEU F:176 , LYS F:179 , GLU F:180 , CHL F:608 , LUT F:5620
BINDING SITE FOR RESIDUE CLA F 610
42
OC2
SOFTWARE
TRP F:16 , LYS F:179 , LYS F:182 , CLA F:612 , LHG F:5630 , BNG F:5633
BINDING SITE FOR RESIDUE CLA F 611
43
OC3
SOFTWARE
LYS F:179 , ASN F:183 , CLA F:611 , LUT F:5620
BINDING SITE FOR RESIDUE CLA F 612
44
OC4
SOFTWARE
PHE F:189 , SER F:190 , PHE F:192 , GLY F:193 , GLN F:197 , THR F:201 , ASN F:208 , HIS F:212 , ASN F:220 , ALA F:221 , PHE F:224 , CLA F:614 , LUT F:5620
BINDING SITE FOR RESIDUE CLA F 613
45
OC5
SOFTWARE
LEU B:125 , TRP B:128 , DGD B:1632 , XAT B:5622 , HIS F:212 , PRO F:216 , CLA F:613 , HOH F:6633
BINDING SITE FOR RESIDUE CLA F 614
46
OC6
SOFTWARE
MET G:73 , PHE G:161 , ASP G:162 , PRO G:163 , LEU G:164 , ASN G:183 , SER G:190 , PHE G:194 , GLN G:197 , PRO G:205 , ASN G:208 , CLA G:610 , CLA G:612 , CLA G:613
BINDING SITE FOR RESIDUE LUT G 6620
47
OC7
SOFTWARE
CLA F:603 , TRP G:46 , ASP G:47 , THR G:48 , ALA G:49 , GLY G:75 , GLY G:78 , CYS G:79 , TRP G:97 , ALA G:100 , MET G:188 , CLA G:602 , CLA G:603 , HOH G:9664
BINDING SITE FOR RESIDUE LUT G 6621
48
OC8
SOFTWARE
TRP F:128 , CHL F:607 , HOH F:6675 , ALA G:221 , TRP G:222 , PHE G:224 , ALA G:225 , PHE G:228 , CHL G:601 , CLA G:613 , CLA G:614 , LHG G:6630
BINDING SITE FOR RESIDUE XAT F 6622
49
OC9
SOFTWARE
TYR G:112 , ALA G:137 , VAL G:138 , TYR G:141 , CLA G:604 , CHL G:606
BINDING SITE FOR RESIDUE NEX G 6623
50
PC1
SOFTWARE
XAT F:6622 , TYR G:44 , LYS G:182 , CHL G:601 , CLA G:611 , HOH G:9651
BINDING SITE FOR RESIDUE LHG G 6630
51
PC2
SOFTWARE
ASN B:218 , ALA C:129 , ILE G:104 , PHE G:105 , GLN G:122 , SER G:123 , ILE G:124 , ALA G:126 , CHL G:605 , ASP H:215 , VAL H:217 , ASN H:218 , CLA H:614 , HOH H:7636 , HOH H:7637 , HOH H:7638 , HOH H:7639
BINDING SITE FOR RESIDUE DGD H 6632
52
PC3
SOFTWARE
CHL F:607 , CHL F:609 , XAT F:6622 , VAL G:22 , LYS G:23 , TYR G:24 , LEU G:25 , GLY G:26 , TYR G:44 , TRP G:46 , CLA G:602 , LHG G:6630
BINDING SITE FOR RESIDUE CHL G 601
53
PC4
SOFTWARE
CLA F:603 , LEU G:36 , PRO G:41 , GLY G:42 , ASP G:43 , TYR G:44 , GLY G:45 , TRP G:46 , ASP G:47 , LEU G:51 , SER G:52 , ASN G:61 , ARG G:62 , LEU G:64 , GLU G:65 , HIS G:68 , ARG G:185 , MET G:188 , PHE G:189 , CHL G:601 , CLA G:603 , LUT G:6621
BINDING SITE FOR RESIDUE CLA G 602
54
PC5
SOFTWARE
LEU B:51 , CLA B:602 , LUT B:1621 , HOH B:5662 , HIS G:68 , PHE G:195 , CLA G:602 , CHL G:607 , CHL G:609 , LUT G:6621 , HOH G:9689
BINDING SITE FOR RESIDUE CLA G 603
55
PC6
SOFTWARE
LEU G:77 , GLY G:78 , PHE G:81 , PHE G:92 , GLU G:94 , GLN G:103 , LEU G:110 , TYR G:112 , LEU G:113 , VAL G:119 , CHL G:606 , NEX G:6623 , HOH G:9641
BINDING SITE FOR RESIDUE CLA G 604
56
PC7
SOFTWARE
SER G:117 , LEU G:118 , VAL G:119 , HIS G:120 , ALA G:121 , GLN G:122 , SER G:123 , CHL G:606 , LEU H:213 , DGD H:6632
BINDING SITE FOR RESIDUE CHL G 605
57
PC8
SOFTWARE
TRP G:71 , GLY G:101 , LEU G:110 , ALA G:121 , ILE G:127 , CYS G:130 , GLN G:131 , CLA G:604 , CHL G:605 , CHL G:607 , NEX G:6623 , HOH G:9640 , HOH G:9642 , HOH G:9661
BINDING SITE FOR RESIDUE CHL G 606
58
PC9
SOFTWARE
TRP B:222 , ALA B:225 , THR B:226 , PHE B:228 , VAL B:229 , PRO B:230 , CHL B:601 , XAT B:1622 , TRP G:97 , PHE G:98 , LYS G:99 , GLY G:101 , SER G:102 , ILE G:104 , PHE G:105 , GLN G:131 , PHE G:195 , CLA G:603 , CHL G:606 , HOH G:9640 , HOH G:9666
BINDING SITE FOR RESIDUE CHL G 607
59
QC1
SOFTWARE
ILE G:67 , ARG G:70 , TRP G:71 , VAL G:138 , TYR G:141 , ARG G:142 , GLY G:146 , PRO G:147 , LEU G:148 , GLY G:149 , PRO G:154 , PRO G:157 , SER G:160 , PHE G:161 , PRO G:163 , CLA G:610 , HOH G:9634 , HOH G:9639 , HOH G:9703
BINDING SITE FOR RESIDUE CHL G 608
60
QC2
SOFTWARE
TRP B:46 , THR B:48 , CHL B:601 , CLA B:602 , LUT B:1621 , GLU G:63 , LEU G:64 , ILE G:67 , HIS G:68 , TRP G:71 , GLN G:131 , VAL G:132 , MET G:135 , GLY G:136 , GLU G:139 , ARG G:142 , ILE G:143 , PHE G:192 , ILE G:199 , CLA G:603
BINDING SITE FOR RESIDUE CHL G 609
61
QC3
SOFTWARE
ARG G:70 , MET G:73 , TYR G:156 , PRO G:157 , GLY G:158 , PHE G:161 , LEU G:166 , PHE G:173 , LEU G:176 , LYS G:179 , GLU G:180 , CHL G:608 , LUT G:6620
BINDING SITE FOR RESIDUE CLA G 610
62
QC4
SOFTWARE
TRP G:16 , LYS G:179 , LYS G:182 , ASN G:183 , LEU G:186 , CLA G:612 , LHG G:6630 , BNG G:6633
BINDING SITE FOR RESIDUE CLA G 611
63
QC5
SOFTWARE
LYS G:179 , ASN G:183 , CLA G:611 , LUT G:6620
BINDING SITE FOR RESIDUE CLA G 612
64
QC6
SOFTWARE
XAT F:6622 , PHE G:189 , GLY G:193 , GLN G:197 , THR G:201 , ASN G:208 , HIS G:212 , ASN G:219 , ASN G:220 , ALA G:221 , PHE G:224 , CLA G:614 , LUT G:6620
BINDING SITE FOR RESIDUE CLA G 613
65
QC7
SOFTWARE
LEU F:125 , TRP F:128 , XAT F:6622 , HIS G:212 , PRO G:216 , ASN G:220 , TRP G:222 , CLA G:613 , DGD G:9632 , HOH G:9643
BINDING SITE FOR RESIDUE CLA G 614
66
VC8
SOFTWARE
ASN D:218 , HOH D:8654 , ALA F:129 , ASP G:215 , VAL G:217 , ASN G:218 , CLA G:614 , HOH G:9685 , HOH G:9686 , HOH G:9687 , ILE J:104 , PHE J:105 , GLN J:122 , SER J:123 , ILE J:124 , ALA J:126 , CHL J:605
BINDING SITE FOR RESIDUE DGD G 9632
67
WC4
SOFTWARE
LEU G:213 , DGD G:9632 , PRO J:116 , SER J:117 , LEU J:118 , VAL J:119 , HIS J:120 , ALA J:121 , GLN J:122 , SER J:123 , CHL J:606
BINDING SITE FOR RESIDUE CHL J 605
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 10)
Info
All SCOP Domains
1a: SCOP_d1rwta_ (A:)
1b: SCOP_d1rwtb_ (B:)
1c: SCOP_d1rwtc_ (C:)
1d: SCOP_d1rwtd_ (D:)
1e: SCOP_d1rwte_ (E:)
1f: SCOP_d1rwtf_ (F:)
1g: SCOP_d1rwtg_ (G:)
1h: SCOP_d1rwth_ (H:)
1i: SCOP_d1rwti_ (I:)
1j: SCOP_d1rwtj_ (J:)
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Protein Domains
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(
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(
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Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Chlorophyll a-b binding protein
(2)
Superfamily
:
Chlorophyll a-b binding protein
(2)
Family
:
Chlorophyll a-b binding protein
(2)
Protein domain
:
Chlorophyll a-b binding protein
(1)
Spinach (Spinacia oleracea) [TaxId: 3562]
(1)
1a
d1rwta_
A:
1b
d1rwtb_
B:
1c
d1rwtc_
C:
1d
d1rwtd_
D:
1e
d1rwte_
E:
1f
d1rwtf_
F:
1g
d1rwtg_
G:
1h
d1rwth_
H:
1i
d1rwti_
I:
1j
d1rwtj_
J:
[
close SCOP info
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CATH Domains
(1, 10)
Info
all CATH domains
1a: CATH_1rwtA01 (A:23-225)
1b: CATH_1rwtB01 (B:23-225)
1c: CATH_1rwtC01 (C:23-225)
1d: CATH_1rwtD01 (D:23-225)
1e: CATH_1rwtE01 (E:23-225)
1f: CATH_1rwtF01 (F:23-225)
1g: CATH_1rwtG01 (G:23-225)
1h: CATH_1rwtH01 (H:23-225)
1i: CATH_1rwtI01 (I:23-225)
1j: CATH_1rwtJ01 (J:23-225)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Chlorophyll a-b binding protein
(3)
Homologous Superfamily
:
Chlorophyll a-b binding protein
(3)
Spinach (Spinacia oleracea)
(1)
1a
1rwtA01
A:23-225
1b
1rwtB01
B:23-225
1c
1rwtC01
C:23-225
1d
1rwtD01
D:23-225
1e
1rwtE01
E:23-225
1f
1rwtF01
F:23-225
1g
1rwtG01
G:23-225
1h
1rwtH01
H:23-225
1i
1rwtI01
I:23-225
1j
1rwtJ01
J:23-225
[
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Pfam Domains
(1, 10)
Info
all PFAM domains
1a: PFAM_Chloroa_b_bind_1rwtJ01 (J:32-199)
1b: PFAM_Chloroa_b_bind_1rwtJ02 (J:32-199)
1c: PFAM_Chloroa_b_bind_1rwtJ03 (J:32-199)
1d: PFAM_Chloroa_b_bind_1rwtJ04 (J:32-199)
1e: PFAM_Chloroa_b_bind_1rwtJ05 (J:32-199)
1f: PFAM_Chloroa_b_bind_1rwtJ06 (J:32-199)
1g: PFAM_Chloroa_b_bind_1rwtJ07 (J:32-199)
1h: PFAM_Chloroa_b_bind_1rwtJ08 (J:32-199)
1i: PFAM_Chloroa_b_bind_1rwtJ09 (J:32-199)
1j: PFAM_Chloroa_b_bind_1rwtJ10 (J:32-199)
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Clan
:
no clan defined [family: Chloroa_b-bind]
(6)
Family
:
Chloroa_b-bind
(6)
Spinacia oleracea (Spinach)
(1)
1a
Chloroa_b-bind-1rwtJ01
J:32-199
1b
Chloroa_b-bind-1rwtJ02
J:32-199
1c
Chloroa_b-bind-1rwtJ03
J:32-199
1d
Chloroa_b-bind-1rwtJ04
J:32-199
1e
Chloroa_b-bind-1rwtJ05
J:32-199
1f
Chloroa_b-bind-1rwtJ06
J:32-199
1g
Chloroa_b-bind-1rwtJ07
J:32-199
1h
Chloroa_b-bind-1rwtJ08
J:32-199
1i
Chloroa_b-bind-1rwtJ09
J:32-199
1j
Chloroa_b-bind-1rwtJ10
J:32-199
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (689 KB)
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Header - Biol.Unit 1
Biol.Unit 2 (189 KB)
Header - Biol.Unit 2
Biol.Unit 3 (189 KB)
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Biol.Unit 4 (189 KB)
Header - Biol.Unit 4
Biol.Unit 5 (3.4 MB)
Header - Biol.Unit 5
Biol.Unit 6 (189 KB)
Header - Biol.Unit 6
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