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1RWL
Asym. Unit
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Asym.Unit (45 KB)
Biol.Unit 1 (40 KB)
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(1)
Title
:
EXTRACELLULAR DOMAIN OF MYCOBACTERIUM TUBERCULOSIS PKND
Authors
:
M. C. Good, A. E. Greenstein, T. A. Young, H. L. Ng, T. Alber, Tb Structural Genomics Consortium (Tbsgc)
Date
:
16 Dec 03 (Deposition) - 27 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Beta Propeller, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. C. Good, A. E. Greenstein, T. A. Young, H. L. Ng, T. Alber
Sensor Domain Of The Mycobacterium Tuberculosis Receptor Ser/Thr Protein Kinase, Pknd, Forms A Highly Symmetric Beta Propeller.
J. Mol. Biol. V. 339 459 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CADMIUM ION (CDa)
1b: CADMIUM ION (CDb)
1c: CADMIUM ION (CDc)
1d: CADMIUM ION (CDd)
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Label:
No.
Name
Count
Type
Full Name
1
CD
4
Ligand/Ion
CADMIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:42
BINDING SITE FOR RESIDUE CD A 501
2
AC2
SOFTWARE
ASP A:151 , ASP A:169 , HOH A:540
BINDING SITE FOR RESIDUE CD A 502
3
AC3
SOFTWARE
ASP A:105 , HOH A:528
BINDING SITE FOR RESIDUE CD A 504
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: NHL (A:12-52|A:96-137|A:59-95|A:138-179...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NHL
PS51125
NHL repeat profile.
PKND_MYCTO
414-456
498-539
461-497
540-581
624-664
582-623
6
A:12-52
A:96-137
A:59-95
A:138-179
A:222-262
A:180-221
PKND_MYCTU
414-456
498-539
461-497
540-581
624-664
582-623
6
A:12-52
A:96-137
A:59-95
A:138-179
A:222-262
A:180-221
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1rwla_ (A:)
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Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
NHL repeat
(3)
Family
:
NHL repeat
(3)
Protein domain
:
Serine/threonine-protein kinase PknD
(2)
Mycobacterium tuberculosis [TaxId: 1773]
(2)
1a
d1rwla_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_1rwlA00 (A:11-268)
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(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
TolB, C-terminal domain
(42)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(2)
1a
1rwlA00
A:11-268
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_NHL_1rwlA01 (A:233-260)
1b: PFAM_NHL_1rwlA02 (A:233-260)
1c: PFAM_NHL_1rwlA03 (A:233-260)
1d: PFAM_NHL_1rwlA04 (A:233-260)
1e: PFAM_NHL_1rwlA05 (A:233-260)
1f: PFAM_NHL_1rwlA06 (A:233-260)
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Clan
:
Beta_propeller
(192)
Family
:
NHL
(2)
Mycobacterium tuberculosis
(1)
1a
NHL-1rwlA01
A:233-260
1b
NHL-1rwlA02
A:233-260
1c
NHL-1rwlA03
A:233-260
1d
NHL-1rwlA04
A:233-260
1e
NHL-1rwlA05
A:233-260
1f
NHL-1rwlA06
A:233-260
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Asym.Unit (45 KB)
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