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1RVZ
Biol. Unit 2
Info
Asym.Unit (522 KB)
Biol.Unit 1 (260 KB)
Biol.Unit 2 (261 KB)
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(1)
Title
:
1934 H1 HEMAGGLUTININ IN COMPLEX WITH LSTC
Authors
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
Date
:
15 Dec 03 (Deposition) - 30 Mar 04 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Hemagglutinin, Influenza A Virus, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. Vasisht, D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
The Structure And Receptor Binding Properties Of The 1918 Influenza Hemagglutinin.
Science V. 303 1838 2004
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
1f: BETA-D-GALACTOSE (GALf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
3d: O-SIALIC ACID (SIAd)
3e: O-SIALIC ACID (SIAe)
3f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
3
Ligand/Ion
O-SIALIC ACID
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Sites
(9, 9)
Info
All Sites
1: BC1 (SOFTWARE)
2: BC2 (SOFTWARE)
3: BC3 (SOFTWARE)
4: BC4 (SOFTWARE)
5: BC5 (SOFTWARE)
6: BC6 (SOFTWARE)
7: BC7 (SOFTWARE)
8: BC8 (SOFTWARE)
9: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
BC1
SOFTWARE
TYR G:95 , GLY G:134 , VAL G:135 , THR G:136 , ALA G:137 , TRP G:153 , HIS G:183 , GLU G:190 , LEU G:194 , GLN G:226 , GAL G:3211 , HOH G:3240 , HOH G:3256 , HOH G:3286 , HOH G:3387
BINDING SITE FOR RESIDUE SIA G 3210
2
BC2
SOFTWARE
LYS G:222 , ASP G:225 , GLN G:226 , SIA G:3210 , NAG G:3212 , HOH G:3278 , HOH G:3328
BINDING SITE FOR RESIDUE GAL G 3211
3
BC3
SOFTWARE
GAL G:3211 , HOH G:3341
BINDING SITE FOR RESIDUE NAG G 3212
4
BC4
SOFTWARE
TYR I:95 , GLY I:134 , VAL I:135 , THR I:136 , ALA I:137 , TRP I:153 , HIS I:183 , GLU I:190 , LEU I:194 , GLN I:226 , GAL I:3214 , HOH I:3243 , HOH I:3245 , HOH I:3377 , HOH I:3482
BINDING SITE FOR RESIDUE SIA I 3213
5
BC5
SOFTWARE
LYS I:222 , ASP I:225 , SIA I:3213 , NAG I:3215 , HOH I:3290
BINDING SITE FOR RESIDUE GAL I 3214
6
BC6
SOFTWARE
GAL I:3214 , HOH I:3250 , HOH I:3411 , HOH I:3494
BINDING SITE FOR RESIDUE NAG I 3215
7
BC7
SOFTWARE
TYR K:95 , VAL K:135 , THR K:136 , ALA K:137 , TRP K:153 , HIS K:183 , GLU K:190 , LEU K:194 , GLN K:226 , GAL K:3217 , HOH K:3249 , HOH K:3278 , HOH K:3314 , HOH K:3465
BINDING SITE FOR RESIDUE SIA K 3216
8
BC8
SOFTWARE
LYS K:222 , ASP K:225 , SIA K:3216 , NAG K:3218 , HOH K:3362
BINDING SITE FOR RESIDUE GAL K 3217
9
BC9
SOFTWARE
GAL K:3217 , HOH K:3253
BINDING SITE FOR RESIDUE NAG K 3218
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1rvza_ (A:)
1b: SCOP_d1rvzc_ (C:)
1c: SCOP_d1rvze_ (E:)
1d: SCOP_d1rvzg_ (G:)
1e: SCOP_d1rvzi_ (I:)
1f: SCOP_d1rvzk_ (K:)
2a: SCOP_d1rvzb_ (B:)
2b: SCOP_d1rvzd_ (D:)
2c: SCOP_d1rvzf_ (F:)
2d: SCOP_d1rvzh_ (H:)
2e: SCOP_d1rvzj_ (J:)
2f: SCOP_d1rvzl_ (L:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1rvza_
A:
1b
d1rvzc_
C:
1c
d1rvze_
E:
1d
d1rvzg_
G:
1e
d1rvzi_
I:
1f
d1rvzk_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1rvzb_
B:
2b
d1rvzd_
D:
2c
d1rvzf_
F:
2d
d1rvzh_
H:
2e
d1rvzj_
J:
2f
d1rvzl_
L:
[
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]
CATH Domains
(3, 18)
Info
all CATH domains
1a: CATH_1rvzA02 (A:47-276)
1b: CATH_1rvzI02 (I:47-276)
1c: CATH_1rvzK02 (K:47-276)
1d: CATH_1rvzC02 (C:47-276)
1e: CATH_1rvzE02 (E:47-276)
1f: CATH_1rvzG02 (G:47-276)
2a: CATH_1rvzB00 (B:501-660)
2b: CATH_1rvzJ00 (J:501-660)
2c: CATH_1rvzL00 (L:501-660)
2d: CATH_1rvzD00 (D:501-660)
2e: CATH_1rvzF00 (F:501-660)
2f: CATH_1rvzH00 (H:501-660)
3a: CATH_1rvzA01 (A:5-46,A:277-327)
3b: CATH_1rvzI01 (I:5-46,I:277-327)
3c: CATH_1rvzK01 (K:5-46,K:277-327)
3d: CATH_1rvzC01 (C:5-46,C:277-327)
3e: CATH_1rvzE01 (E:5-46,E:277-327)
3f: CATH_1rvzG01 (G:5-46,G:277-327)
View:
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
1a
1rvzA02
A:47-276
1b
1rvzI02
I:47-276
1c
1rvzK02
K:47-276
1d
1rvzC02
C:47-276
1e
1rvzE02
E:47-276
1f
1rvzG02
G:47-276
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
2a
1rvzB00
B:501-660
2b
1rvzJ00
J:501-660
2c
1rvzL00
L:501-660
2d
1rvzD00
D:501-660
2e
1rvzF00
F:501-660
2f
1rvzH00
H:501-660
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
3a
1rvzA01
A:5-46,A:277-327
3b
1rvzI01
I:5-46,I:277-327
3c
1rvzK01
K:5-46,K:277-327
3d
1rvzC01
C:5-46,C:277-327
3e
1rvzE01
E:5-46,E:277-327
3f
1rvzG01
G:5-46,G:277-327
[
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]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1rvzL01 (L:501-660)
1b: PFAM_Hemagglutinin_1rvzL02 (L:501-660)
1c: PFAM_Hemagglutinin_1rvzL03 (L:501-660)
1d: PFAM_Hemagglutinin_1rvzL04 (L:501-660)
1e: PFAM_Hemagglutinin_1rvzL05 (L:501-660)
1f: PFAM_Hemagglutinin_1rvzL06 (L:501-660)
1g: PFAM_Hemagglutinin_1rvzL07 (L:501-660)
1h: PFAM_Hemagglutinin_1rvzL08 (L:501-660)
1i: PFAM_Hemagglutinin_1rvzL09 (L:501-660)
1j: PFAM_Hemagglutinin_1rvzL10 (L:501-660)
1k: PFAM_Hemagglutinin_1rvzL11 (L:501-660)
1l: PFAM_Hemagglutinin_1rvzL12 (L:501-660)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
(3)
1a
Hemagglutinin-1rvzL01
L:501-660
1b
Hemagglutinin-1rvzL02
L:501-660
1c
Hemagglutinin-1rvzL03
L:501-660
1d
Hemagglutinin-1rvzL04
L:501-660
1e
Hemagglutinin-1rvzL05
L:501-660
1f
Hemagglutinin-1rvzL06
L:501-660
1g
Hemagglutinin-1rvzL07
L:501-660
1h
Hemagglutinin-1rvzL08
L:501-660
1i
Hemagglutinin-1rvzL09
L:501-660
1j
Hemagglutinin-1rvzL10
L:501-660
1k
Hemagglutinin-1rvzL11
L:501-660
1l
Hemagglutinin-1rvzL12
L:501-660
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Asymmetric Unit 1
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Asym.Unit (522 KB)
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