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1RVZ
Biol. Unit 1
Info
Asym.Unit (522 KB)
Biol.Unit 1 (260 KB)
Biol.Unit 2 (261 KB)
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(1)
Title
:
1934 H1 HEMAGGLUTININ IN COMPLEX WITH LSTC
Authors
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
Date
:
15 Dec 03 (Deposition) - 30 Mar 04 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Hemagglutinin, Influenza A Virus, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. Vasisht, D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
The Structure And Receptor Binding Properties Of The 1918 Influenza Hemagglutinin.
Science V. 303 1838 2004
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
1f: BETA-D-GALACTOSE (GALf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
3d: O-SIALIC ACID (SIAd)
3e: O-SIALIC ACID (SIAe)
3f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
3
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
3
Ligand/Ion
O-SIALIC ACID
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:95 , VAL A:135 , THR A:136 , ALA A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , GLN A:226 , GAL A:3202 , HOH A:3385 , HOH A:3391 , HOH A:3422 , HOH A:3499
BINDING SITE FOR RESIDUE SIA A 3201
02
AC2
SOFTWARE
LYS A:222 , ASP A:225 , GLN A:226 , SIA A:3201 , NAG A:3203 , HOH A:3461
BINDING SITE FOR RESIDUE GAL A 3202
03
AC3
SOFTWARE
ASN A:193 , GAL A:3202
BINDING SITE FOR RESIDUE NAG A 3203
04
AC4
SOFTWARE
TYR C:95 , VAL C:135 , THR C:136 , ALA C:137 , HIS C:183 , GLU C:190 , LEU C:194 , GLN C:226 , GAL C:3205 , HOH C:3253 , HOH C:3260 , HOH C:3440 , HOH C:3460
BINDING SITE FOR RESIDUE SIA C 3204
05
AC5
SOFTWARE
LYS C:222 , ASP C:225 , SIA C:3204 , NAG C:3206 , HOH C:3276
BINDING SITE FOR RESIDUE GAL C 3205
06
AC6
SOFTWARE
GAL C:3205 , HOH C:3245
BINDING SITE FOR RESIDUE NAG C 3206
07
AC7
SOFTWARE
TYR E:95 , VAL E:135 , THR E:136 , ALA E:137 , TRP E:153 , HIS E:183 , GLU E:190 , LEU E:194 , GLN E:226 , GAL E:3208 , HOH E:3320 , HOH E:3360 , HOH E:3362 , HOH E:3406
BINDING SITE FOR RESIDUE SIA E 3207
08
AC8
SOFTWARE
LYS E:222 , ASP E:225 , SIA E:3207 , NAG E:3209 , HOH E:3403
BINDING SITE FOR RESIDUE GAL E 3208
09
AC9
SOFTWARE
GAL E:3208 , HOH E:3348
BINDING SITE FOR RESIDUE NAG E 3209
10
CC1
SOFTWARE
ASN A:27 , HOH A:3498 , HOH A:3534
BINDING SITE FOR RESIDUE NAG A 3321
11
CC2
SOFTWARE
ASN E:272
BINDING SITE FOR RESIDUE NAG E 3311
12
CC3
SOFTWARE
GLU F:647 , GLU F:650 , ASN F:654
BINDING SITE FOR RESIDUE NAG F 3331
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1rvza_ (A:)
1b: SCOP_d1rvzc_ (C:)
1c: SCOP_d1rvze_ (E:)
1d: SCOP_d1rvzg_ (G:)
1e: SCOP_d1rvzi_ (I:)
1f: SCOP_d1rvzk_ (K:)
2a: SCOP_d1rvzb_ (B:)
2b: SCOP_d1rvzd_ (D:)
2c: SCOP_d1rvzf_ (F:)
2d: SCOP_d1rvzh_ (H:)
2e: SCOP_d1rvzj_ (J:)
2f: SCOP_d1rvzl_ (L:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1rvza_
A:
1b
d1rvzc_
C:
1c
d1rvze_
E:
1d
d1rvzg_
G:
1e
d1rvzi_
I:
1f
d1rvzk_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1rvzb_
B:
2b
d1rvzd_
D:
2c
d1rvzf_
F:
2d
d1rvzh_
H:
2e
d1rvzj_
J:
2f
d1rvzl_
L:
[
close SCOP info
]
CATH Domains
(3, 18)
Info
all CATH domains
1a: CATH_1rvzA02 (A:47-276)
1b: CATH_1rvzI02 (I:47-276)
1c: CATH_1rvzK02 (K:47-276)
1d: CATH_1rvzC02 (C:47-276)
1e: CATH_1rvzE02 (E:47-276)
1f: CATH_1rvzG02 (G:47-276)
2a: CATH_1rvzB00 (B:501-660)
2b: CATH_1rvzJ00 (J:501-660)
2c: CATH_1rvzL00 (L:501-660)
2d: CATH_1rvzD00 (D:501-660)
2e: CATH_1rvzF00 (F:501-660)
2f: CATH_1rvzH00 (H:501-660)
3a: CATH_1rvzA01 (A:5-46,A:277-327)
3b: CATH_1rvzI01 (I:5-46,I:277-327)
3c: CATH_1rvzK01 (K:5-46,K:277-327)
3d: CATH_1rvzC01 (C:5-46,C:277-327)
3e: CATH_1rvzE01 (E:5-46,E:277-327)
3f: CATH_1rvzG01 (G:5-46,G:277-327)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
1a
1rvzA02
A:47-276
1b
1rvzI02
I:47-276
1c
1rvzK02
K:47-276
1d
1rvzC02
C:47-276
1e
1rvzE02
E:47-276
1f
1rvzG02
G:47-276
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
2a
1rvzB00
B:501-660
2b
1rvzJ00
J:501-660
2c
1rvzL00
L:501-660
2d
1rvzD00
D:501-660
2e
1rvzF00
F:501-660
2f
1rvzH00
H:501-660
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
3a
1rvzA01
A:5-46,A:277-327
3b
1rvzI01
I:5-46,I:277-327
3c
1rvzK01
K:5-46,K:277-327
3d
1rvzC01
C:5-46,C:277-327
3e
1rvzE01
E:5-46,E:277-327
3f
1rvzG01
G:5-46,G:277-327
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1rvzL01 (L:501-660)
1b: PFAM_Hemagglutinin_1rvzL02 (L:501-660)
1c: PFAM_Hemagglutinin_1rvzL03 (L:501-660)
1d: PFAM_Hemagglutinin_1rvzL04 (L:501-660)
1e: PFAM_Hemagglutinin_1rvzL05 (L:501-660)
1f: PFAM_Hemagglutinin_1rvzL06 (L:501-660)
1g: PFAM_Hemagglutinin_1rvzL07 (L:501-660)
1h: PFAM_Hemagglutinin_1rvzL08 (L:501-660)
1i: PFAM_Hemagglutinin_1rvzL09 (L:501-660)
1j: PFAM_Hemagglutinin_1rvzL10 (L:501-660)
1k: PFAM_Hemagglutinin_1rvzL11 (L:501-660)
1l: PFAM_Hemagglutinin_1rvzL12 (L:501-660)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
(3)
1a
Hemagglutinin-1rvzL01
L:501-660
1b
Hemagglutinin-1rvzL02
L:501-660
1c
Hemagglutinin-1rvzL03
L:501-660
1d
Hemagglutinin-1rvzL04
L:501-660
1e
Hemagglutinin-1rvzL05
L:501-660
1f
Hemagglutinin-1rvzL06
L:501-660
1g
Hemagglutinin-1rvzL07
L:501-660
1h
Hemagglutinin-1rvzL08
L:501-660
1i
Hemagglutinin-1rvzL09
L:501-660
1j
Hemagglutinin-1rvzL10
L:501-660
1k
Hemagglutinin-1rvzL11
L:501-660
1l
Hemagglutinin-1rvzL12
L:501-660
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Asym.Unit (522 KB)
Header - Asym.Unit
Biol.Unit 1 (260 KB)
Header - Biol.Unit 1
Biol.Unit 2 (261 KB)
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