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1RVZ
Asym. Unit
Info
Asym.Unit (522 KB)
Biol.Unit 1 (260 KB)
Biol.Unit 2 (261 KB)
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(1)
Title
:
1934 H1 HEMAGGLUTININ IN COMPLEX WITH LSTC
Authors
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
Date
:
15 Dec 03 (Deposition) - 30 Mar 04 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Hemagglutinin, Influenza A Virus, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. Vasisht, D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
The Structure And Receptor Binding Properties Of The 1918 Influenza Hemagglutinin.
Science V. 303 1838 2004
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Hetero Components
(3, 21)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
1f: BETA-D-GALACTOSE (GALf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
3d: O-SIALIC ACID (SIAd)
3e: O-SIALIC ACID (SIAe)
3f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
6
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
9
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
6
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:95 , VAL A:135 , THR A:136 , ALA A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , GLN A:226 , GAL A:3202 , HOH A:3385 , HOH A:3391 , HOH A:3422 , HOH A:3499
BINDING SITE FOR RESIDUE SIA A 3201
02
AC2
SOFTWARE
LYS A:222 , ASP A:225 , GLN A:226 , SIA A:3201 , NAG A:3203 , HOH A:3461
BINDING SITE FOR RESIDUE GAL A 3202
03
AC3
SOFTWARE
ASN A:193 , GAL A:3202
BINDING SITE FOR RESIDUE NAG A 3203
04
AC4
SOFTWARE
TYR C:95 , VAL C:135 , THR C:136 , ALA C:137 , HIS C:183 , GLU C:190 , LEU C:194 , GLN C:226 , GAL C:3205 , HOH C:3253 , HOH C:3260 , HOH C:3440 , HOH C:3460
BINDING SITE FOR RESIDUE SIA C 3204
05
AC5
SOFTWARE
LYS C:222 , ASP C:225 , SIA C:3204 , NAG C:3206 , HOH C:3276
BINDING SITE FOR RESIDUE GAL C 3205
06
AC6
SOFTWARE
GAL C:3205 , HOH C:3245
BINDING SITE FOR RESIDUE NAG C 3206
07
AC7
SOFTWARE
TYR E:95 , VAL E:135 , THR E:136 , ALA E:137 , TRP E:153 , HIS E:183 , GLU E:190 , LEU E:194 , GLN E:226 , GAL E:3208 , HOH E:3320 , HOH E:3360 , HOH E:3362 , HOH E:3406
BINDING SITE FOR RESIDUE SIA E 3207
08
AC8
SOFTWARE
LYS E:222 , ASP E:225 , SIA E:3207 , NAG E:3209 , HOH E:3403
BINDING SITE FOR RESIDUE GAL E 3208
09
AC9
SOFTWARE
GAL E:3208 , HOH E:3348
BINDING SITE FOR RESIDUE NAG E 3209
10
BC1
SOFTWARE
TYR G:95 , GLY G:134 , VAL G:135 , THR G:136 , ALA G:137 , TRP G:153 , HIS G:183 , GLU G:190 , LEU G:194 , GLN G:226 , GAL G:3211 , HOH G:3240 , HOH G:3256 , HOH G:3286 , HOH G:3387
BINDING SITE FOR RESIDUE SIA G 3210
11
BC2
SOFTWARE
LYS G:222 , ASP G:225 , GLN G:226 , SIA G:3210 , NAG G:3212 , HOH G:3278 , HOH G:3328
BINDING SITE FOR RESIDUE GAL G 3211
12
BC3
SOFTWARE
GAL G:3211 , HOH G:3341
BINDING SITE FOR RESIDUE NAG G 3212
13
BC4
SOFTWARE
TYR I:95 , GLY I:134 , VAL I:135 , THR I:136 , ALA I:137 , TRP I:153 , HIS I:183 , GLU I:190 , LEU I:194 , GLN I:226 , GAL I:3214 , HOH I:3243 , HOH I:3245 , HOH I:3377 , HOH I:3482
BINDING SITE FOR RESIDUE SIA I 3213
14
BC5
SOFTWARE
LYS I:222 , ASP I:225 , SIA I:3213 , NAG I:3215 , HOH I:3290
BINDING SITE FOR RESIDUE GAL I 3214
15
BC6
SOFTWARE
GAL I:3214 , HOH I:3250 , HOH I:3411 , HOH I:3494
BINDING SITE FOR RESIDUE NAG I 3215
16
BC7
SOFTWARE
TYR K:95 , VAL K:135 , THR K:136 , ALA K:137 , TRP K:153 , HIS K:183 , GLU K:190 , LEU K:194 , GLN K:226 , GAL K:3217 , HOH K:3249 , HOH K:3278 , HOH K:3314 , HOH K:3465
BINDING SITE FOR RESIDUE SIA K 3216
17
BC8
SOFTWARE
LYS K:222 , ASP K:225 , SIA K:3216 , NAG K:3218 , HOH K:3362
BINDING SITE FOR RESIDUE GAL K 3217
18
BC9
SOFTWARE
GAL K:3217 , HOH K:3253
BINDING SITE FOR RESIDUE NAG K 3218
19
CC1
SOFTWARE
ASN A:27 , HOH A:3498 , HOH A:3534
BINDING SITE FOR RESIDUE NAG A 3321
20
CC2
SOFTWARE
ASN E:272
BINDING SITE FOR RESIDUE NAG E 3311
21
CC3
SOFTWARE
GLU F:647 , GLU F:650 , ASN F:654
BINDING SITE FOR RESIDUE NAG F 3331
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1rvza_ (A:)
1b: SCOP_d1rvzc_ (C:)
1c: SCOP_d1rvze_ (E:)
1d: SCOP_d1rvzg_ (G:)
1e: SCOP_d1rvzi_ (I:)
1f: SCOP_d1rvzk_ (K:)
2a: SCOP_d1rvzb_ (B:)
2b: SCOP_d1rvzd_ (D:)
2c: SCOP_d1rvzf_ (F:)
2d: SCOP_d1rvzh_ (H:)
2e: SCOP_d1rvzj_ (J:)
2f: SCOP_d1rvzl_ (L:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1rvza_
A:
1b
d1rvzc_
C:
1c
d1rvze_
E:
1d
d1rvzg_
G:
1e
d1rvzi_
I:
1f
d1rvzk_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1rvzb_
B:
2b
d1rvzd_
D:
2c
d1rvzf_
F:
2d
d1rvzh_
H:
2e
d1rvzj_
J:
2f
d1rvzl_
L:
[
close SCOP info
]
CATH Domains
(3, 18)
Info
all CATH domains
1a: CATH_1rvzA02 (A:47-276)
1b: CATH_1rvzI02 (I:47-276)
1c: CATH_1rvzK02 (K:47-276)
1d: CATH_1rvzC02 (C:47-276)
1e: CATH_1rvzE02 (E:47-276)
1f: CATH_1rvzG02 (G:47-276)
2a: CATH_1rvzB00 (B:501-660)
2b: CATH_1rvzJ00 (J:501-660)
2c: CATH_1rvzL00 (L:501-660)
2d: CATH_1rvzD00 (D:501-660)
2e: CATH_1rvzF00 (F:501-660)
2f: CATH_1rvzH00 (H:501-660)
3a: CATH_1rvzA01 (A:5-46,A:277-327)
3b: CATH_1rvzI01 (I:5-46,I:277-327)
3c: CATH_1rvzK01 (K:5-46,K:277-327)
3d: CATH_1rvzC01 (C:5-46,C:277-327)
3e: CATH_1rvzE01 (E:5-46,E:277-327)
3f: CATH_1rvzG01 (G:5-46,G:277-327)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
1a
1rvzA02
A:47-276
1b
1rvzI02
I:47-276
1c
1rvzK02
K:47-276
1d
1rvzC02
C:47-276
1e
1rvzE02
E:47-276
1f
1rvzG02
G:47-276
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
2a
1rvzB00
B:501-660
2b
1rvzJ00
J:501-660
2c
1rvzL00
L:501-660
2d
1rvzD00
D:501-660
2e
1rvzF00
F:501-660
2f
1rvzH00
H:501-660
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
3a
1rvzA01
A:5-46,A:277-327
3b
1rvzI01
I:5-46,I:277-327
3c
1rvzK01
K:5-46,K:277-327
3d
1rvzC01
C:5-46,C:277-327
3e
1rvzE01
E:5-46,E:277-327
3f
1rvzG01
G:5-46,G:277-327
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1rvzL01 (L:501-660)
1b: PFAM_Hemagglutinin_1rvzL02 (L:501-660)
1c: PFAM_Hemagglutinin_1rvzL03 (L:501-660)
1d: PFAM_Hemagglutinin_1rvzL04 (L:501-660)
1e: PFAM_Hemagglutinin_1rvzL05 (L:501-660)
1f: PFAM_Hemagglutinin_1rvzL06 (L:501-660)
1g: PFAM_Hemagglutinin_1rvzL07 (L:501-660)
1h: PFAM_Hemagglutinin_1rvzL08 (L:501-660)
1i: PFAM_Hemagglutinin_1rvzL09 (L:501-660)
1j: PFAM_Hemagglutinin_1rvzL10 (L:501-660)
1k: PFAM_Hemagglutinin_1rvzL11 (L:501-660)
1l: PFAM_Hemagglutinin_1rvzL12 (L:501-660)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
(3)
1a
Hemagglutinin-1rvzL01
L:501-660
1b
Hemagglutinin-1rvzL02
L:501-660
1c
Hemagglutinin-1rvzL03
L:501-660
1d
Hemagglutinin-1rvzL04
L:501-660
1e
Hemagglutinin-1rvzL05
L:501-660
1f
Hemagglutinin-1rvzL06
L:501-660
1g
Hemagglutinin-1rvzL07
L:501-660
1h
Hemagglutinin-1rvzL08
L:501-660
1i
Hemagglutinin-1rvzL09
L:501-660
1j
Hemagglutinin-1rvzL10
L:501-660
1k
Hemagglutinin-1rvzL11
L:501-660
1l
Hemagglutinin-1rvzL12
L:501-660
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Asym.Unit (522 KB)
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