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1RVX
Asym. Unit
Info
Asym.Unit (532 KB)
Biol.Unit 1 (266 KB)
Biol.Unit 2 (266 KB)
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(1)
Title
:
1934 H1 HEMAGGLUTININ IN COMPLEX WITH LSTA
Authors
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
Date
:
15 Dec 03 (Deposition) - 30 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Hemagglutinin, Influenza A Virus, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. Vasisht, D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
The Structure And Receptor Binding Properties Of The 1918 Influenza Hemagglutinin.
Science V. 303 1838 2004
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Hetero Components
(3, 28)
Info
All Hetero Components
1a: BETA-D-GALACTOSE (GALa)
1b: BETA-D-GALACTOSE (GALb)
1c: BETA-D-GALACTOSE (GALc)
1d: BETA-D-GALACTOSE (GALd)
1e: BETA-D-GALACTOSE (GALe)
1f: BETA-D-GALACTOSE (GALf)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3a: O-SIALIC ACID (SIAa)
3b: O-SIALIC ACID (SIAb)
3c: O-SIALIC ACID (SIAc)
3d: O-SIALIC ACID (SIAd)
3e: O-SIALIC ACID (SIAe)
3f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GAL
6
Ligand/Ion
BETA-D-GALACTOSE
2
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
3
SIA
6
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
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Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:95 , GLY A:134 , VAL A:135 , THR A:136 , ALA A:137 , TRP A:153 , HIS A:183 , GLU A:190 , LEU A:194 , GLN A:226 , GAL A:3022 , HOH A:3031 , HOH A:3051 , HOH A:3105 , HOH A:3161 , HOH A:3281
BINDING SITE FOR RESIDUE SIA A 3021
02
AC2
SOFTWARE
GLN A:226 , SIA A:3021 , NAG A:3023 , HOH A:3161 , HOH A:3186
BINDING SITE FOR RESIDUE GAL A 3022
03
AC3
SOFTWARE
GAL A:3022
BINDING SITE FOR RESIDUE NAG A 3023
04
AC4
SOFTWARE
TYR C:95 , GLY C:134 , VAL C:135 , THR C:136 , ALA C:137 , TRP C:153 , HIS C:183 , GLU C:190 , LEU C:194 , GLN C:226 , GAL C:3025 , HOH C:3036 , HOH C:3138 , HOH C:3166
BINDING SITE FOR RESIDUE SIA C 3024
05
AC5
SOFTWARE
GLN C:226 , SIA C:3024 , NAG C:3026
BINDING SITE FOR RESIDUE GAL C 3025
06
AC6
SOFTWARE
GAL C:3025
BINDING SITE FOR RESIDUE NAG C 3026
07
AC7
SOFTWARE
TYR E:95 , GLY E:134 , VAL E:135 , THR E:136 , ALA E:137 , TRP E:153 , HIS E:183 , GLU E:190 , LEU E:194 , GLN E:226 , GAL E:3028 , HOH E:3035 , HOH E:3045 , HOH E:3186 , HOH E:3187 , HOH E:3202
BINDING SITE FOR RESIDUE SIA E 3027
08
AC8
SOFTWARE
GLN E:226 , SIA E:3027 , NAG E:3029 , HOH E:3045 , HOH E:3085 , HOH E:3297 , HOH E:3308
BINDING SITE FOR RESIDUE GAL E 3028
09
AC9
SOFTWARE
GAL E:3028 , HOH E:3297 , HOH E:3308 , HOH E:3344
BINDING SITE FOR RESIDUE NAG E 3029
10
BC1
SOFTWARE
TYR G:95 , GLY G:134 , VAL G:135 , THR G:136 , ALA G:137 , TRP G:153 , HIS G:183 , GLU G:190 , LEU G:194 , GLN G:226 , GAL G:3031 , HOH G:3049 , HOH G:3080 , HOH G:3241 , HOH G:3261
BINDING SITE FOR RESIDUE SIA G 3030
11
BC2
SOFTWARE
GLN G:226 , SIA G:3030 , NAG G:3032 , HOH G:3222 , HOH G:3261
BINDING SITE FOR RESIDUE GAL G 3031
12
BC3
SOFTWARE
GAL G:3031
BINDING SITE FOR RESIDUE NAG G 3032
13
BC4
SOFTWARE
TYR I:95 , GLY I:134 , VAL I:135 , THR I:136 , ALA I:137 , TRP I:153 , HIS I:183 , GLU I:190 , LEU I:194 , GLN I:226 , GAL I:3034 , HOH I:3062 , HOH I:3129 , HOH I:3213
BINDING SITE FOR RESIDUE SIA I 3033
14
BC5
SOFTWARE
GLN I:226 , SIA I:3033 , NAG I:3035 , HOH I:3253
BINDING SITE FOR RESIDUE GAL I 3034
15
BC6
SOFTWARE
GAL I:3034
BINDING SITE FOR RESIDUE NAG I 3035
16
BC7
SOFTWARE
TYR K:95 , GLY K:134 , VAL K:135 , THR K:136 , ALA K:137 , TRP K:153 , HIS K:183 , GLU K:190 , LEU K:194 , GLN K:226 , GAL K:3037 , HOH K:3055 , HOH K:3085 , HOH K:3185
BINDING SITE FOR RESIDUE SIA K 3036
17
BC8
SOFTWARE
GLN K:226 , SIA K:3036 , NAG K:3038 , HOH K:3138 , HOH K:3185 , HOH K:3286
BINDING SITE FOR RESIDUE GAL K 3037
18
BC9
SOFTWARE
GAL K:3037 , HOH K:3286
BINDING SITE FOR RESIDUE NAG K 3038
19
CC1
SOFTWARE
ASN G:27 , HOH G:3281
BINDING SITE FOR RESIDUE NAG G 3011
20
CC2
SOFTWARE
ASN G:290
BINDING SITE FOR RESIDUE NAG G 3012
21
CC3
SOFTWARE
ASN I:290
BINDING SITE FOR RESIDUE NAG I 3013
22
CC4
SOFTWARE
GLU J:647 , ASN J:654 , THR J:656
BINDING SITE FOR RESIDUE NAG J 3014
23
CC5
SOFTWARE
ASN K:290
BINDING SITE FOR RESIDUE NAG K 3015
24
CC6
SOFTWARE
GLU L:647 , GLU L:650 , SER L:651 , ASN L:654 , THR L:656 , HOH L:3107 , HOH L:3108
BINDING SITE FOR RESIDUE NAG L 3016
25
CC7
SOFTWARE
ASN A:27
BINDING SITE FOR RESIDUE NAG A 3017
26
CC8
SOFTWARE
ASN A:290 , HOH A:3271
BINDING SITE FOR RESIDUE NAG A 3018
27
CC9
SOFTWARE
GLU B:647 , GLU B:650 , ASN B:654
BINDING SITE FOR RESIDUE NAG B 3019
28
DC1
SOFTWARE
ASN C:15
BINDING SITE FOR RESIDUE NAG C 3020
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 12)
Info
All SCOP Domains
1a: SCOP_d1rvxa_ (A:)
1b: SCOP_d1rvxc_ (C:)
1c: SCOP_d1rvxe_ (E:)
1d: SCOP_d1rvxg_ (G:)
1e: SCOP_d1rvxi_ (I:)
1f: SCOP_d1rvxk_ (K:)
2a: SCOP_d1rvxb_ (B:)
2b: SCOP_d1rvxd_ (D:)
2c: SCOP_d1rvxf_ (F:)
2d: SCOP_d1rvxh_ (H:)
2e: SCOP_d1rvxj_ (J:)
2f: SCOP_d1rvxl_ (L:)
View:
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Classes
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Folds
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(
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Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1rvxa_
A:
1b
d1rvxc_
C:
1c
d1rvxe_
E:
1d
d1rvxg_
G:
1e
d1rvxi_
I:
1f
d1rvxk_
K:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1rvxb_
B:
2b
d1rvxd_
D:
2c
d1rvxf_
F:
2d
d1rvxh_
H:
2e
d1rvxj_
J:
2f
d1rvxl_
L:
[
close SCOP info
]
CATH Domains
(3, 18)
Info
all CATH domains
1a: CATH_1rvxA02 (A:47-276)
1b: CATH_1rvxC02 (C:47-276)
1c: CATH_1rvxE02 (E:47-276)
1d: CATH_1rvxG02 (G:47-276)
1e: CATH_1rvxI02 (I:47-276)
1f: CATH_1rvxK02 (K:47-276)
2a: CATH_1rvxB00 (B:501-660)
2b: CATH_1rvxD00 (D:501-660)
2c: CATH_1rvxH00 (H:501-660)
2d: CATH_1rvxJ00 (J:501-660)
2e: CATH_1rvxF00 (F:501-659)
2f: CATH_1rvxL00 (L:501-659)
3a: CATH_1rvxA01 (A:5-46,A:277-327)
3b: CATH_1rvxC01 (C:5-46,C:277-327)
3c: CATH_1rvxE01 (E:5-46,E:277-327)
3d: CATH_1rvxG01 (G:5-46,G:277-327)
3e: CATH_1rvxI01 (I:5-46,I:277-327)
3f: CATH_1rvxK01 (K:5-46,K:277-327)
View:
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)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
1a
1rvxA02
A:47-276
1b
1rvxC02
C:47-276
1c
1rvxE02
E:47-276
1d
1rvxG02
G:47-276
1e
1rvxI02
I:47-276
1f
1rvxK02
K:47-276
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
2a
1rvxB00
B:501-660
2b
1rvxD00
D:501-660
2c
1rvxH00
H:501-660
2d
1rvxJ00
J:501-660
2e
1rvxF00
F:501-659
2f
1rvxL00
L:501-659
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus (a/puerto rico/8/34(h1n1)). Organism_taxid: 211044.Strain: a-puerto rico-8-34.
(3)
3a
1rvxA01
A:5-46,A:277-327
3b
1rvxC01
C:5-46,C:277-327
3c
1rvxE01
E:5-46,E:277-327
3d
1rvxG01
G:5-46,G:277-327
3e
1rvxI01
I:5-46,I:277-327
3f
1rvxK01
K:5-46,K:277-327
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1rvxL01 (L:501-659)
1b: PFAM_Hemagglutinin_1rvxL02 (L:501-659)
1c: PFAM_Hemagglutinin_1rvxL03 (L:501-659)
1d: PFAM_Hemagglutinin_1rvxL04 (L:501-659)
1e: PFAM_Hemagglutinin_1rvxL05 (L:501-659)
1f: PFAM_Hemagglutinin_1rvxL06 (L:501-659)
1g: PFAM_Hemagglutinin_1rvxL07 (L:501-659)
1h: PFAM_Hemagglutinin_1rvxL08 (L:501-659)
1i: PFAM_Hemagglutinin_1rvxL09 (L:501-659)
1j: PFAM_Hemagglutinin_1rvxL10 (L:501-659)
1k: PFAM_Hemagglutinin_1rvxL11 (L:501-659)
1l: PFAM_Hemagglutinin_1rvxL12 (L:501-659)
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Clans
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Puerto Rico/8/1934 H1N1)
(3)
1a
Hemagglutinin-1rvxL01
L:501-659
1b
Hemagglutinin-1rvxL02
L:501-659
1c
Hemagglutinin-1rvxL03
L:501-659
1d
Hemagglutinin-1rvxL04
L:501-659
1e
Hemagglutinin-1rvxL05
L:501-659
1f
Hemagglutinin-1rvxL06
L:501-659
1g
Hemagglutinin-1rvxL07
L:501-659
1h
Hemagglutinin-1rvxL08
L:501-659
1i
Hemagglutinin-1rvxL09
L:501-659
1j
Hemagglutinin-1rvxL10
L:501-659
1k
Hemagglutinin-1rvxL11
L:501-659
1l
Hemagglutinin-1rvxL12
L:501-659
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