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1RVG
Asym. Unit
Info
Asym.Unit (214 KB)
Biol.Unit 1 (107 KB)
Biol.Unit 2 (106 KB)
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(1)
Title
:
CRYSTAL STRCUTURE OF CLASS II FRUCTOSE-BISPHOSPHATE ALDOLASE FROM THERMUS AQUATICUS IN COMPLEX WITH Y
Authors
:
T. Izard, J. Sygusch
Date
:
13 Dec 03 (Deposition) - 27 Jan 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Class Ii Aldolase, Metal-Depdendent Aldolase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Izard, J. Sygusch
Induced Fit Movements And Metal Cofactor Selectivity Of Class Ii Aldolases: Structure Of Thermus Aquaticus Fructose-1, 6-Bisphosphate Aldolase.
J. Biol. Chem. V. 279 11825 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: COBALT (II) ION (COa)
1b: COBALT (II) ION (COb)
1c: COBALT (II) ION (COc)
1d: COBALT (II) ION (COd)
1e: COBALT (II) ION (COe)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
4a: YTTRIUM (III) ION (YT3a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
5
Ligand/Ion
COBALT (II) ION
2
NA
4
Ligand/Ion
SODIUM ION
3
SO4
11
Ligand/Ion
SULFATE ION
4
YT3
1
Ligand/Ion
YTTRIUM (III) ION
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:278 , SER B:49 , GLY B:51 , ARG B:257 , HOH B:1744 , HOH B:1926
BINDING SITE FOR RESIDUE SO4 B 1601
02
AC2
SOFTWARE
GLY B:209 , ALA B:210 , SER B:211 , ASN B:251 , ASP B:253 , THR B:254 , HOH B:1775 , HOH B:1831 , HOH B:1884
BINDING SITE FOR RESIDUE SO4 B 1602
03
AC3
SOFTWARE
SER A:49 , GLY A:51 , HOH A:1887 , HOH A:1978 , ARG B:278
BINDING SITE FOR RESIDUE SO4 A 1603
04
AC4
SOFTWARE
HIS A:178 , GLY A:179 , GLY A:209 , ALA A:210 , SER A:211 , ASP A:253 , THR A:254 , HOH A:1906 , HOH A:2027
BINDING SITE FOR RESIDUE SO4 A 1604
05
AC5
SOFTWARE
SER C:49 , GLY C:51 , ARG C:257 , HOH C:1771 , ARG D:278
BINDING SITE FOR RESIDUE SO4 C 1605
06
AC6
SOFTWARE
GLY C:209 , SER C:211 , ASN C:251 , ASP C:253 , THR C:254 , HOH C:1738 , HOH C:1855 , HOH C:1952
BINDING SITE FOR RESIDUE SO4 C 1606
07
AC7
SOFTWARE
ARG C:278 , SER D:49 , GLY D:51 , ARG D:257 , HOH D:1752 , HOH D:1753
BINDING SITE FOR RESIDUE SO4 D 1607
08
AC8
SOFTWARE
GLY D:209 , SER D:211 , ASN D:251 , THR D:252 , ASP D:253 , THR D:254
BINDING SITE FOR RESIDUE SO4 D 1608
09
AC9
SOFTWARE
SER A:104 , GLU A:132 , ARG A:135 , LEU A:136 , YT3 A:1801 , HOH A:2006
BINDING SITE FOR RESIDUE SO4 A 1609
10
BC1
SOFTWARE
ARG B:116 , HIS B:123 , HOH B:1792 , HOH B:1845
BINDING SITE FOR RESIDUE SO4 B 1610
11
BC2
SOFTWARE
ARG C:116 , HIS C:123
BINDING SITE FOR RESIDUE SO4 C 1611
12
BC3
SOFTWARE
HIS B:81 , GLU B:132 , HIS B:178 , HIS B:208
BINDING SITE FOR RESIDUE CO B 1701
13
BC4
SOFTWARE
HIS B:78 , ASP B:80 , MET B:100 , GLU B:130 , HIS B:208 , LYS B:249 , ASN B:251 , HOH B:1704
BINDING SITE FOR RESIDUE NA B 1702
14
BC5
SOFTWARE
HIS A:81 , HIS A:178 , HIS A:208 , CO A:1709 , HOH A:1944 , HOH A:2027
BINDING SITE FOR RESIDUE CO A 1703
15
BC6
SOFTWARE
HIS A:78 , ASP A:80 , MET A:100 , GLU A:130 , HIS A:208 , LYS A:249 , HOH A:1803
BINDING SITE FOR RESIDUE NA A 1704
16
BC7
SOFTWARE
HIS C:81 , GLU C:132 , HIS C:178 , HIS C:208 , HOH C:1715
BINDING SITE FOR RESIDUE CO C 1705
17
BC8
SOFTWARE
HIS C:78 , ASP C:80 , GLU C:130 , HIS C:208 , LYS C:249 , ASN C:251
BINDING SITE FOR RESIDUE NA C 1706
18
BC9
SOFTWARE
HIS D:81 , GLU D:132 , HIS D:178 , HIS D:208 , HOH D:1729
BINDING SITE FOR RESIDUE CO D 1707
19
CC1
SOFTWARE
HIS D:78 , ASP D:80 , GLU D:130 , HIS D:208 , LYS D:249 , ASN D:251
BINDING SITE FOR RESIDUE NA D 1708
20
CC2
SOFTWARE
HIS A:81 , LEU A:136 , HIS A:178 , HIS A:208 , CO A:1703 , HOH A:1964
BINDING SITE FOR RESIDUE CO A 1709
21
CC3
SOFTWARE
ASP A:102 , SER A:104 , GLU A:132 , SO4 A:1609 , HOH A:1964
BINDING SITE FOR RESIDUE YT3 A 1801
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1rvga_ (A:)
1b: SCOP_d1rvgb_ (B:)
1c: SCOP_d1rvgc_ (C:)
1d: SCOP_d1rvgd_ (D:)
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class II FBP aldolase
(9)
Protein domain
:
Fructose-bisphosphate aldolase (FBP aldolase)
(6)
Thermus aquaticus [TaxId: 271]
(2)
1a
d1rvga_
A:
1b
d1rvgb_
B:
1c
d1rvgc_
C:
1d
d1rvgd_
D:
[
close SCOP info
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1rvgA00 (A:1-305)
1b: CATH_1rvgB00 (B:1-305)
1c: CATH_1rvgC00 (C:1-305)
1d: CATH_1rvgD00 (D:1-305)
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Thermus aquaticus. Organism_taxid: 271.
(2)
1a
1rvgA00
A:1-305
1b
1rvgB00
B:1-305
1c
1rvgC00
C:1-305
1d
1rvgD00
D:1-305
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain D
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (214 KB)
Header - Asym.Unit
Biol.Unit 1 (107 KB)
Header - Biol.Unit 1
Biol.Unit 2 (106 KB)
Header - Biol.Unit 2
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