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1RUZ
Asym. Unit
Info
Asym.Unit (253 KB)
Biol.Unit 1 (246 KB)
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(1)
Title
:
1918 H1 HEMAGGLUTININ
Authors
:
J. J. Skehel, S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. X N. Vasisht, D. A. Steinhauer, R. S. Daniels
Date
:
12 Dec 03 (Deposition) - 30 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : H,I,J,K,L,M
Biol. Unit 1: H,I,J,K,L,M (1x)
Keywords
:
Hemagglutinin, Influenza A Virus, Viral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. J. Gamblin, L. F. Haire, R. J. Russell, D. J. Stevens, B. Xiao, Y. Ha, N. Vasisht, D. A. Steinhauer, R. S. Daniels, A. Elliot, D. C. Wiley, J. J. Skehel
The Structure And Receptor Binding Properties Of The 1918 Influenza Hemagglutinin.
Science V. 303 1838 2004
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
2b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
2c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
2d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
2e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
2f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
2g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
2h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
2i: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
NDG
9
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN H:68 , GLU H:70 , ASN H:91 , CYS H:94 , ARG H:224 , NAG H:641
BINDING SITE FOR RESIDUE NDG H 640
02
AC2
SOFTWARE
ARG H:224 , NDG H:640
BINDING SITE FOR RESIDUE NAG H 641
03
AC3
SOFTWARE
ASN H:279 , ASN H:290 , HOH H:676 , ASP L:18
BINDING SITE FOR RESIDUE NAG H 644
04
AC4
SOFTWARE
ASN H:15
BINDING SITE FOR RESIDUE NDG H 645
05
AC5
SOFTWARE
ASN H:27 , HOH H:663
BINDING SITE FOR RESIDUE NDG H 646
06
AC6
SOFTWARE
ASN J:68 , GLU J:70 , ASN J:91 , CYS J:94 , ARG J:224 , NDG J:651
BINDING SITE FOR RESIDUE NDG J 650
07
AC7
SOFTWARE
NDG J:650
BINDING SITE FOR RESIDUE NDG J 651
08
AC8
SOFTWARE
GLU K:650 , ASN K:654 , THR K:656 , HOH K:680
BINDING SITE FOR RESIDUE NDG K 661
09
AC9
SOFTWARE
ASN L:68 , GLU L:70 , ASN L:91 , CYS L:94 , ARG L:224
BINDING SITE FOR RESIDUE NDG L 660
10
BC1
SOFTWARE
ASN L:27 , HOH L:786
BINDING SITE FOR RESIDUE NDG L 664
11
BC2
SOFTWARE
ASN M:654 , THR M:656 , HOH M:716 , HOH M:721
BINDING SITE FOR RESIDUE NDG M 665
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1ruzh_ (H:)
1b: SCOP_d1ruzj_ (J:)
1c: SCOP_d1ruzl_ (L:)
2a: SCOP_d1ruzi_ (I:)
2b: SCOP_d1ruzk_ (K:)
2c: SCOP_d1ruzm_ (M:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Viral protein domain
(195)
Superfamily
:
Viral protein domain
(195)
Family
:
Influenza hemagglutinin headpiece
(152)
Protein domain
:
Hemagglutinin
(109)
Influenza A virus, different strains [TaxId: 11320]
(97)
1a
d1ruzh_
H:
1b
d1ruzj_
J:
1c
d1ruzl_
L:
Class
:
Coiled coil proteins
(689)
Fold
:
Stalk segment of viral fusion proteins
(231)
Superfamily
:
Influenza hemagglutinin (stalk)
(172)
Family
:
Influenza hemagglutinin (stalk)
(161)
Protein domain
:
Influenza hemagglutinin (stalk)
(102)
Influenza A virus, different strains [TaxId: 11320]
(93)
2a
d1ruzi_
I:
2b
d1ruzk_
K:
2c
d1ruzm_
M:
[
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CATH Domains
(3, 9)
Info
all CATH domains
1a: CATH_1ruzH02 (H:47-276)
1b: CATH_1ruzJ02 (J:47-276)
1c: CATH_1ruzL02 (L:47-276)
2a: CATH_1ruzI00 (I:501-660)
2b: CATH_1ruzK00 (K:501-660)
2c: CATH_1ruzM00 (M:501-660)
3a: CATH_1ruzH01 (H:5-46,H:277-327)
3b: CATH_1ruzJ01 (J:5-46,J:277-327)
3c: CATH_1ruzL01 (L:5-46,L:277-327)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Hemagglutinin (Ha1 Chain); Chain: A; domain 1
(59)
Homologous Superfamily
:
[code=3.90.209.20, no name defined]
(59)
Influenza a virus (a/south carolina/1/18 (h1n1)). Organism_taxid: 59375. Strain: a-south carolina-1-18 (h1n1).
(1)
1a
1ruzH02
H:47-276
1b
1ruzJ02
J:47-276
1c
1ruzL02
L:47-276
Topology
:
Hemagglutinin Ectodomain; Chain B
(70)
Homologous Superfamily
:
[code=3.90.20.10, no name defined]
(69)
Influenza a virus (a/south carolina/1/18 (h1n1)). Organism_taxid: 59375. Strain: a-south carolina-1-18 (h1n1).
(1)
2a
1ruzI00
I:501-660
2b
1ruzK00
K:501-660
2c
1ruzM00
M:501-660
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Hemagglutinin; Chain A, domain 2
(27)
Homologous Superfamily
:
Hemagglutinin Chain A, Domain 2
(27)
Influenza a virus (a/south carolina/1/18 (h1n1)). Organism_taxid: 59375. Strain: a-south carolina-1-18 (h1n1).
(1)
3a
1ruzH01
H:5-46,H:277-327
3b
1ruzJ01
J:5-46,J:277-327
3c
1ruzL01
L:5-46,L:277-327
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Hemagglutinin_1ruzM01 (M:501-660)
1b: PFAM_Hemagglutinin_1ruzM02 (M:501-660)
1c: PFAM_Hemagglutinin_1ruzM03 (M:501-660)
1d: PFAM_Hemagglutinin_1ruzM04 (M:501-660)
1e: PFAM_Hemagglutinin_1ruzM05 (M:501-660)
1f: PFAM_Hemagglutinin_1ruzM06 (M:501-660)
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Clans
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)
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Hemagglutinin]
(58)
Family
:
Hemagglutinin
(58)
Influenza A virus (strain A/Brevig Mission/1/1918 H1N1) (Influenza A virus (strain A/South Carolina/
(5)
1a
Hemagglutinin-1ruzM01
M:501-660
1b
Hemagglutinin-1ruzM02
M:501-660
1c
Hemagglutinin-1ruzM03
M:501-660
1d
Hemagglutinin-1ruzM04
M:501-660
1e
Hemagglutinin-1ruzM05
M:501-660
1f
Hemagglutinin-1ruzM06
M:501-660
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Asymmetric Unit 1
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