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1RU3
Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (126 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MONOMERIC ACETYL-COA SYNTHASE FROM CARBOXYDOTHERMUS HYDROGENOFORMANS
Authors
:
V. Svetlitchnyi, H. Dobbek, W. Meyer-Klaucke, T. Meins, B. Thiele, P. R R. Huber, O. Meyer
Date
:
11 Dec 03 (Deposition) - 23 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Nickel, Cluster A, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Svetlitchnyi, H. Dobbek, W. Meyer-Klaucke, T. Meins, B. Thiele, P. Rmer, R. Huber, O. Meyer
A Functional Ni-Ni-[4Fe-4S] Cluster In The Monomeric Acetyl-Coa Synthase From Carboxydothermus Hydrogenoformans
Proc. Natl. Acad. Sci. Usa V. 101 446 2004
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Hetero Components
(3, 15)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
2a: NICKEL (II) ION (NIa)
2b: NICKEL (II) ION (NIb)
3a: IRON/SULFUR CLUSTER (SF4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
12
Ligand/Ion
GLYCEROL
2
NI
2
Ligand/Ion
NICKEL (II) ION
3
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:512 , CYS A:598 , CYS A:600 , SF4 A:733 , NI A:735 , HOH A:736
BINDING SITE FOR RESIDUE NI A 734
02
AC2
SOFTWARE
CYS A:598 , GLY A:599 , CYS A:600 , PHE A:601 , NI A:734
BINDING SITE FOR RESIDUE NI A 735
03
AC3
SOFTWARE
CYS A:509 , CYS A:512 , CYS A:521 , CYS A:531 , ILE A:534 , CYS A:598 , CYS A:600 , NI A:734
BINDING SITE FOR RESIDUE SF4 A 733
04
AC4
SOFTWARE
GLU A:40 , LEU A:43 , SER A:44 , ASN A:87
BINDING SITE FOR RESIDUE GOL A 959
05
AC5
SOFTWARE
TYR A:38 , MET A:263 , VAL A:264
BINDING SITE FOR RESIDUE GOL A 960
06
AC6
SOFTWARE
TYR A:38 , SER A:44 , GOL A:968
BINDING SITE FOR RESIDUE GOL A 961
07
AC7
SOFTWARE
VAL A:56 , GLY A:57 , TYR A:58 , THR A:61 , PHE A:64 , VAL A:76 , ARG A:77 , HOH A:851
BINDING SITE FOR RESIDUE GOL A 962
08
AC8
SOFTWARE
ASN A:87 , ARG A:90 , ALA A:91 , HOH A:886
BINDING SITE FOR RESIDUE GOL A 963
09
AC9
SOFTWARE
ALA A:502 , LYS A:540 , GOL A:965
BINDING SITE FOR RESIDUE GOL A 964
10
BC1
SOFTWARE
VAL A:503 , ASP A:504 , THR A:505 , TYR A:507 , GOL A:964
BINDING SITE FOR RESIDUE GOL A 965
11
BC2
SOFTWARE
LEU A:608 , GLU A:610 , GOL A:967
BINDING SITE FOR RESIDUE GOL A 966
12
BC3
SOFTWARE
MET A:629 , MET A:637 , PHE A:647 , GOL A:966
BINDING SITE FOR RESIDUE GOL A 967
13
BC4
SOFTWARE
SER A:44 , ARG A:45 , GLU A:48 , GOL A:961
BINDING SITE FOR RESIDUE GOL A 968
14
BC5
SOFTWARE
TYR A:63 , LEU A:230 , HOH A:757 , HOH A:795
BINDING SITE FOR RESIDUE GOL A 969
15
BC6
SOFTWARE
ILE A:156 , GLY A:183
BINDING SITE FOR RESIDUE GOL A 970
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ru3a_ (A:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
Prismane protein-like
(31)
Superfamily
:
Prismane protein-like
(31)
Family
:
Acetyl-CoA synthase
(6)
Protein domain
:
Monomeric acetyl-CoA synthase
(1)
Carboxydothermus hydrogenoformans [TaxId: 129958]
(1)
1a
d1ru3a_
A:
[
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]
CATH Domains
(5, 5)
Info
all CATH domains
1a: CATH_1ru3A03 (A:321-498)
2a: CATH_1ru3A05 (A:603-732)
3a: CATH_1ru3A04 (A:499-587)
4a: CATH_1ru3A02 (A:125-314)
5a: CATH_1ru3A01 (A:5-124)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3
(6)
Homologous Superfamily
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3
(6)
Carboxydothermus hydrogenoformans. Organism_taxid: 129958
(1)
1a
1ru3A03
A:321-498
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5
(6)
Homologous Superfamily
:
Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5
(6)
Carboxydothermus hydrogenoformans. Organism_taxid: 129958
(1)
2a
1ru3A05
A:603-732
Topology
:
Ribonuclease HI; Chain A
(10)
Homologous Superfamily
:
Carbon monoxide dehydrogenase alpha subunit. Chain D, domain 4
(6)
Carboxydothermus hydrogenoformans. Organism_taxid: 129958
(1)
3a
1ru3A04
A:499-587
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2030, no name defined]
(25)
Carboxydothermus hydrogenoformans. Organism_taxid: 129958
(5)
4a
1ru3A02
A:125-314
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1
(6)
Carboxydothermus hydrogenoformans. Organism_taxid: 129958
(1)
5a
1ru3A01
A:5-124
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_CdhC_1ru3A01 (A:320-732)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: CdhC]
(4)
Family
:
CdhC
(4)
Carboxydothermus hydrogenoformans
(1)
1a
CdhC-1ru3A01
A:320-732
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Chain A
Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (132 KB)
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