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1RTS
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (88 KB)
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(1)
Title
:
THYMIDYLATE SYNTHASE FROM RAT IN TERNARY COMPLEX WITH DUMP AND TOMUDEX
Authors
:
R. R. Sotelo-Mundo, J. Ciesla, J. M. Dzik, W. Rode, F. Maley, G. Maley, L. W. R. Montfort
Date
:
19 Jun 98 (Deposition) - 16 Feb 99 (Release) - 10 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Thymidylate Synthase, Methyltransferase, Dump, Tomudex, Antifolate
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
R. R. Sotelo-Mundo, J. Ciesla, J. M. Dzik, W. Rode, F. Maley, G. F. Maley L. W. Hardy, W. R. Montfort
Crystal Structures Of Rat Thymidylate Synthase Inhibited By Tomudex, A Potent Anticancer Drug.
Biochemistry V. 38 1087 1999
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: TOMUDEX (D16a)
1b: TOMUDEX (D16b)
2a: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPa)
2b: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (UMPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
D16
2
Ligand/Ion
TOMUDEX
2
UMP
2
Ligand/Ion
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: NUL (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:44 , LEU A:186 , CYS A:189 , HIS A:190 , ARG A:209 , SER A:210 , GLY A:211 , ASP A:212 , GLY A:216 , ASN A:220 , HIS A:250 , TYR A:252 , D16 A:309 , ARG B:169 , ARG B:170
BINDING SITE FOR RESIDUE UMP A 308
2
AC2
SOFTWARE
ARG A:169 , ARG A:170 , ARG B:44 , CYS B:189 , HIS B:190 , ARG B:209 , SER B:210 , GLY B:211 , ASP B:212 , ASN B:220 , HIS B:250 , TYR B:252 , D16 B:409
BINDING SITE FOR RESIDUE UMP B 408
3
AC3
SOFTWARE
PHE A:74 , ILE A:102 , TRP A:103 , ASP A:212 , LEU A:215 , GLY A:216 , PHE A:219 , TYR A:252 , UMP A:308
BINDING SITE FOR RESIDUE D16 A 309
4
AC4
SOFTWARE
PHE B:74 , ARG B:101 , ASP B:212 , GLY B:216 , PHE B:219 , TYR B:252 , UMP B:408
BINDING SITE FOR RESIDUE D16 B 409
5
NUL
UNKNOWN
CYS A:189
CATALYTIC RESIDUE, EQUIVALENT TO C146 IN E. COLI THYMIDYLATE SYNTHASE.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: THYMIDYLATE_SYNTHASE (A:169-197,B:169-197)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THYMIDYLATE_SYNTHASE
PS00091
Thymidylate synthase active site.
TYSY_RAT
169-197
2
A:169-197
B:169-197
[
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:21-63 | B:21-63)
Exon 1.2 (A:63-87 | B:63-87)
Exon 1.3 (A:88-146 | B:88-146)
Exon 1.4 (A:146-180 | B:146-180)
Exon 1.5 (A:180-238 | B:180-238)
Exon 1.6 (A:239-262 | B:239-262)
Exon 1.7 (A:263-300 | B:263-303)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000056243
1
ENSRNOE00000379744
chr9:
112617720-112617520
201
TYSY_RAT
1-63
63
2
A:21-63
B:21-63
43
43
1.2
ENSRNOT00000056243
2
ENSRNOE00000379743
chr9:
112616068-112615995
74
TYSY_RAT
63-87
25
2
A:63-87
B:63-87
25
25
1.3
ENSRNOT00000056243
3
ENSRNOE00000379741
chr9:
112614594-112614420
175
TYSY_RAT
88-146
59
2
A:88-146
B:88-146
59
59
1.4
ENSRNOT00000056243
4
ENSRNOE00000379738
chr9:
112608554-112608453
102
TYSY_RAT
146-180
35
2
A:146-180
B:146-180
35
35
1.5
ENSRNOT00000056243
5
ENSRNOE00000379737
chr9:
112607843-112607668
176
TYSY_RAT
180-238
59
2
A:180-238
B:180-238
59
59
1.6
ENSRNOT00000056243
6
ENSRNOE00000379735
chr9:
112606752-112606681
72
TYSY_RAT
239-262
24
2
A:239-262
B:239-262
24
24
1.7
ENSRNOT00000056243
7
ENSRNOE00000379732
chr9:
112605839-112605432
408
TYSY_RAT
263-307
45
2
A:263-300
B:263-303
38
41
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1rtsa_ (A:)
1b: SCOP_d1rtsb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Superfamily
:
Thymidylate synthase/dCMP hydroxymethylase
(193)
Family
:
Thymidylate synthase/dCMP hydroxymethylase
(183)
Protein domain
:
Thymidylate synthase
(137)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d1rtsa_
A:
1b
d1rtsb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1rtsA00 (A:21-300)
1b: CATH_1rtsB00 (B:21-303)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Thymidylate Synthase; Chain A
(160)
Homologous Superfamily
:
Thymidylate Synthase, chain A
(160)
Norway rat (Rattus norvegicus)
(2)
1a
1rtsA00
A:21-300
1b
1rtsB00
B:21-303
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Thymidylat_synt_1rtsB01 (B:24-303)
1b: PFAM_Thymidylat_synt_1rtsB02 (B:24-303)
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Organisms
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)
(
)
Clan
:
no clan defined [family: Thymidylat_synt]
(68)
Family
:
Thymidylat_synt
(68)
Rattus norvegicus (Rat)
(2)
1a
Thymidylat_synt-1rtsB01
B:24-303
1b
Thymidylat_synt-1rtsB02
B:24-303
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