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1RSG
Asym. Unit
Info
Asym.Unit (187 KB)
Biol.Unit 1 (180 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE POLYAMINE OXIDASE FMS1 FROM YEAST
Authors
:
Q. Huang, Q. Liu, Q. Hao
Date
:
09 Dec 03 (Deposition) - 15 Feb 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Fad Binding Motif, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Huang, Q. Liu, Q. Hao
Crystal Structures Of Fms1 And Its Complex With Spermine Reveal Substrate Specificity.
J. Mol. Biol. V. 348 951 2005
(for further references see the
PDB file header
)
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
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No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
MSE
22
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:15 , GLY A:17 , ILE A:18 , ALA A:19 , GLU A:39 , ALA A:40 , ARG A:41 , GLY A:45 , GLY A:46 , ARG A:47 , GLY A:62 , ALA A:63 , SER A:64 , TRP A:65 , HIS A:67 , CYS A:221 , VAL A:223 , THR A:252 , VAL A:253 , PRO A:254 , GLY A:270 , LEU A:294 , LYS A:296 , TRP A:440 , TYR A:445 , GLY A:478 , GLU A:479 , GLY A:487 , CYS A:488 , ALA A:489 , ALA A:492 , HOH A:1802 , HOH A:1805 , HOH A:1808 , HOH A:1810 , HOH A:1815 , HOH A:1836 , HOH A:2168
BINDING SITE FOR RESIDUE FAD A 1801
2
AC2
SOFTWARE
GLY B:15 , GLY B:17 , ILE B:18 , ALA B:19 , LEU B:38 , GLU B:39 , ALA B:40 , ARG B:41 , GLY B:45 , GLY B:46 , ARG B:47 , GLY B:62 , ALA B:63 , SER B:64 , TRP B:65 , HIS B:67 , CYS B:221 , VAL B:223 , THR B:252 , VAL B:253 , GLY B:270 , LEU B:294 , TYR B:445 , GLY B:478 , GLU B:479 , GLY B:487 , CYS B:488 , ALA B:489 , ALA B:492 , HOH B:1808 , HOH B:1821 , HOH B:1822 , HOH B:1838 , HOH B:1868 , HOH B:1905 , HOH B:2032
BINDING SITE FOR RESIDUE FAD B 1802
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(1, 2)
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All Exons
Exon 1.1 (A:6-508 (gaps) | B:8-508 (gaps))
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YMR020W
1
YMR020W.1
XIII:315376-316902
1527
FMS1_YEAST
1-508
508
2
A:6-508 (gaps)
B:8-508 (gaps)
503
501
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SCOP Domains
(0, 0)
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1rsgB01 (B:8-47,B:200-290,B:455-511)
1b: CATH_1rsgA01 (A:6-91,A:196-289,A:445-513)
2a: CATH_1rsgA02 (A:92-195,A:290-444)
2b: CATH_1rsgB02 (B:48-199,B:291-454)
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Organisms
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(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Baker's yeast (Saccharomyces cerevisiae)
(22)
1a
1rsgB01
B:8-47,B:200-290,B:455-511
1b
1rsgA01
A:6-91,A:196-289,A:445-513
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Polyamine Oxidase; Chain A, domain 2
(62)
Homologous Superfamily
:
[code=3.90.660.10, no name defined]
(61)
Baker's yeast (Saccharomyces cerevisiae)
(14)
2a
1rsgA02
A:92-195,A:290-444
2b
1rsgB02
B:48-199,B:291-454
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Amino_oxidase_1rsgB01 (B:18-504)
1b: PFAM_Amino_oxidase_1rsgB02 (B:18-504)
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Clan
:
NADP_Rossmann
(1239)
Family
:
Amino_oxidase
(60)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(3)
1a
Amino_oxidase-1rsgB01
B:18-504
1b
Amino_oxidase-1rsgB02
B:18-504
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Asymmetric Unit 1
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