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1RSC
Asym. Unit
Info
Asym.Unit (743 KB)
Biol.Unit 1 (736 KB)
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(1)
Title
:
STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULOSE BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEX BETWEEN ENZYME AND XYLULOSE BISPHOSPHATE
Authors
:
J. Newman, S. Gutteridge
Date
:
29 Mar 94 (Deposition) - 08 May 95 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Lyase (Carbon-Carbon)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Newman, S. Gutteridge
Structure Of An Effector-Induced Inactivated State Of Ribulose 1, 5-Bisphosphate Carboxylase/Oxygenase: The Binary Complex Between Enzyme And Xylulose 1, 5-Bisphosphate.
Structure V. 2 495 1994
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: XYLULOSE-1,5-BISPHOSPHATE (XBPa)
1b: XYLULOSE-1,5-BISPHOSPHATE (XBPb)
1c: XYLULOSE-1,5-BISPHOSPHATE (XBPc)
1d: XYLULOSE-1,5-BISPHOSPHATE (XBPd)
1e: XYLULOSE-1,5-BISPHOSPHATE (XBPe)
1f: XYLULOSE-1,5-BISPHOSPHATE (XBPf)
1g: XYLULOSE-1,5-BISPHOSPHATE (XBPg)
1h: XYLULOSE-1,5-BISPHOSPHATE (XBPh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
XBP
8
Ligand/Ion
XYLULOSE-1,5-BISPHOSPHATE
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: 1P (UNKNOWN)
02: 1P2 (UNKNOWN)
03: 1P3 (UNKNOWN)
04: 1P4 (UNKNOWN)
05: 1P5 (UNKNOWN)
06: 1P6 (UNKNOWN)
07: 1P7 (UNKNOWN)
08: 1P8 (UNKNOWN)
09: 2P (UNKNOWN)
10: 2P2 (UNKNOWN)
11: 2P3 (UNKNOWN)
12: 2P4 (UNKNOWN)
13: 2P6 (UNKNOWN)
14: 2P7 (UNKNOWN)
15: 3P5 (UNKNOWN)
16: 3P8 (UNKNOWN)
17: AC1 (SOFTWARE)
18: AC2 (SOFTWARE)
19: AC3 (SOFTWARE)
20: AC4 (SOFTWARE)
21: AC5 (SOFTWARE)
22: AC6 (SOFTWARE)
23: AC7 (SOFTWARE)
24: AC8 (SOFTWARE)
25: BP2 (UNKNOWN)
26: BP3 (UNKNOWN)
27: BP4 (UNKNOWN)
28: BP5 (UNKNOWN)
29: BP6 (UNKNOWN)
30: BP7 (UNKNOWN)
31: BP8 (UNKNOWN)
32: XBP (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
1P
UNKNOWN
LYS A:334 , GLY A:381 , GLY A:403 , GLY A:404
NULL
02
1P2
UNKNOWN
LYS B:334 , GLY B:381 , GLY B:403 , GLY B:404
NULL
03
1P3
UNKNOWN
LYS C:334 , GLY C:381 , GLY C:403 , GLY C:404
NULL
04
1P4
UNKNOWN
LYS D:334 , GLY D:381 , GLY D:403 , GLY D:404
NULL
05
1P5
UNKNOWN
LYS E:334 , GLY E:381 , GLY E:403 , GLY E:404
NULL
06
1P6
UNKNOWN
LYS F:334 , GLY F:381 , GLY F:403 , GLY F:404
NULL
07
1P7
UNKNOWN
LYS G:334 , GLY G:381 , GLY G:403 , GLY G:404
NULL
08
1P8
UNKNOWN
LYS H:334 , GLY H:381 , GLY H:403 , GLY H:404
NULL
09
2P
UNKNOWN
HIS A:327 , ARG A:295 , SER A:379
NULL
10
2P2
UNKNOWN
HIS B:327 , ARG B:295 , SER B:379
NULL
11
2P3
UNKNOWN
HIS C:327 , ARG C:295 , SER C:379
NULL
12
2P4
UNKNOWN
HIS D:327 , ARG D:295 , SER D:379
NULL
13
2P6
UNKNOWN
HIS F:327 , ARG F:295 , SER F:379
NULL
14
2P7
UNKNOWN
HIS G:327 , ARG G:295 , SER G:379
NULL
15
3P5
UNKNOWN
HIS E:327 , ARG E:295 , SER E:379
NULL
16
3P8
UNKNOWN
HIS H:327 , ARG H:295 , SER H:379
NULL
17
AC1
SOFTWARE
LYS A:175 , LYS A:177 , ASP A:203 , GLU A:204 , HIS A:294 , ARG A:295 , HIS A:327 , LYS A:334 , LEU A:335 , SER A:379 , GLY A:380 , GLY A:381 , GLY A:403 , GLY A:404 , HOH A:496 , HOH A:588 , HOH A:589 , HOH A:590 , HOH A:598 , HOH A:599 , GLU B:60 , THR B:65 , TRP B:66 , ASN B:123 , HOH B:477
BINDING SITE FOR RESIDUE XBP A 476
18
AC2
SOFTWARE
GLU A:60 , THR A:65 , TRP A:66 , ASN A:123 , HOH A:615 , LYS B:175 , LYS B:177 , ASP B:203 , GLU B:204 , HIS B:294 , ARG B:295 , HIS B:327 , LYS B:334 , LEU B:335 , SER B:379 , GLY B:380 , GLY B:381 , GLY B:403 , GLY B:404 , HOH B:479
BINDING SITE FOR RESIDUE XBP B 476
19
AC3
SOFTWARE
LYS C:175 , LYS C:177 , ASP C:203 , GLU C:204 , HIS C:294 , ARG C:295 , HIS C:327 , LYS C:334 , LEU C:335 , SER C:379 , GLY C:380 , GLY C:381 , GLY C:403 , GLY C:404 , GLU D:60 , THR D:65 , TRP D:66 , ASN D:123
BINDING SITE FOR RESIDUE XBP C 476
20
AC4
SOFTWARE
GLU C:60 , THR C:65 , TRP C:66 , ASN C:123 , LYS D:175 , LYS D:177 , ASP D:203 , GLU D:204 , HIS D:294 , ARG D:295 , HIS D:327 , LYS D:334 , LEU D:335 , SER D:379 , GLY D:380 , GLY D:381 , GLY D:403 , GLY D:404
BINDING SITE FOR RESIDUE XBP D 476
21
AC5
SOFTWARE
LYS E:175 , LYS E:177 , ASP E:203 , GLU E:204 , HIS E:294 , ARG E:295 , HIS E:327 , LYS E:334 , LEU E:335 , SER E:379 , GLY E:380 , GLY E:381 , GLY E:403 , GLY E:404 , GLU F:60 , THR F:65 , TRP F:66 , ASN F:123
BINDING SITE FOR RESIDUE XBP E 476
22
AC6
SOFTWARE
GLU E:60 , THR E:65 , TRP E:66 , ASN E:123 , LYS F:175 , LYS F:177 , ASP F:203 , GLU F:204 , HIS F:294 , ARG F:295 , HIS F:327 , LYS F:334 , LEU F:335 , SER F:379 , GLY F:380 , GLY F:381 , GLY F:403 , GLY F:404
BINDING SITE FOR RESIDUE XBP F 476
23
AC7
SOFTWARE
LYS G:175 , LYS G:177 , ASP G:203 , GLU G:204 , HIS G:294 , ARG G:295 , HIS G:327 , LYS G:334 , LEU G:335 , SER G:379 , GLY G:380 , GLY G:381 , GLY G:403 , GLY G:404 , GLU H:60 , THR H:65 , TRP H:66 , ASN H:123
BINDING SITE FOR RESIDUE XBP G 476
24
AC8
SOFTWARE
GLU G:60 , THR G:65 , TRP G:66 , ASN G:123 , LYS H:175 , LYS H:177 , ASP H:203 , GLU H:204 , HIS H:294 , ARG H:295 , HIS H:327 , LYS H:334 , LEU H:335 , SER H:379 , GLY H:380 , GLY H:381 , GLY H:403 , GLY H:404
BINDING SITE FOR RESIDUE XBP H 476
25
BP2
UNKNOWN
LYS B:175 , ASP B:203 , GLU B:204 , HIS B:294 , LYS B:334 , SER B:379
NULL
26
BP3
UNKNOWN
LYS C:175 , ASP C:203 , GLU C:204 , HIS C:294 , LYS C:334 , SER C:379
NULL
27
BP4
UNKNOWN
LYS D:175 , ASP D:203 , GLU D:204 , HIS D:294 , LYS D:334 , SER D:379
NULL
28
BP5
UNKNOWN
LYS E:175 , ASP E:203 , GLU E:204 , HIS E:294 , LYS E:334 , SER E:379
NULL
29
BP6
UNKNOWN
LYS F:175 , ASP F:203 , GLU F:204 , HIS F:294 , LYS F:334 , SER F:379
NULL
30
BP7
UNKNOWN
LYS G:175 , ASP G:203 , GLU G:204 , HIS G:294 , LYS G:334 , SER G:379
NULL
31
BP8
UNKNOWN
LYS H:175 , ASP H:203 , GLU H:204 , HIS H:294 , LYS H:334 , SER H:379
NULL
32
XBP
UNKNOWN
LYS A:175 , ASP A:203 , GLU A:204 , HIS A:294 , LYS A:334 , SER A:379
NULL
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: RUBISCO_LARGE (A:196-204,B:196-204,C:196-204,D:19...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RUBISCO_LARGE
PS00157
Ribulose bisphosphate carboxylase large chain active site.
RBL_SYNP6
193-201
8
A:196-204
B:196-204
C:196-204
D:196-204
E:196-204
F:196-204
G:196-204
H:196-204
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 24)
Info
All SCOP Domains
1a: SCOP_d1rsca2 (A:9-147)
1b: SCOP_d1rscc2 (C:9-147)
1c: SCOP_d1rscd2 (D:9-147)
1d: SCOP_d1rsce2 (E:9-147)
1e: SCOP_d1rscf2 (F:9-147)
1f: SCOP_d1rscg2 (G:9-147)
1g: SCOP_d1rsch2 (H:9-147)
1h: SCOP_d1rscb2 (B:9-147)
2a: SCOP_d1rsci_ (I:)
2b: SCOP_d1rsck_ (K:)
2c: SCOP_d1rscl_ (L:)
2d: SCOP_d1rscm_ (M:)
2e: SCOP_d1rscn_ (N:)
2f: SCOP_d1rsco_ (O:)
2g: SCOP_d1rscp_ (P:)
2h: SCOP_d1rscj_ (J:)
3a: SCOP_d1rsca1 (A:148-475)
3b: SCOP_d1rscc1 (C:148-475)
3c: SCOP_d1rscd1 (D:148-475)
3d: SCOP_d1rsce1 (E:148-475)
3e: SCOP_d1rscf1 (F:148-475)
3f: SCOP_d1rscg1 (G:148-475)
3g: SCOP_d1rsch1 (H:148-475)
3h: SCOP_d1rscb1 (B:148-475)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
RuBisCO, large subunit, small (N-terminal) domain
(66)
Family
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(39)
Synechococcus sp., strain pcc 6301 [TaxId: 1131]
(2)
1a
d1rsca2
A:9-147
1b
d1rscc2
C:9-147
1c
d1rscd2
D:9-147
1d
d1rsce2
E:9-147
1e
d1rscf2
F:9-147
1f
d1rscg2
G:9-147
1g
d1rsch2
H:9-147
1h
d1rscb2
B:9-147
Fold
:
RuBisCO, small subunit
(44)
Superfamily
:
RuBisCO, small subunit
(44)
Family
:
RuBisCO, small subunit
(44)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(28)
Synechococcus sp., strain pcc 6301 [TaxId: 1131]
(2)
2a
d1rsci_
I:
2b
d1rsck_
K:
2c
d1rscl_
L:
2d
d1rscm_
M:
2e
d1rscn_
N:
2f
d1rsco_
O:
2g
d1rscp_
P:
2h
d1rscj_
J:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
RuBisCo, C-terminal domain
(66)
Family
:
RuBisCo, large subunit, C-terminal domain
(56)
Protein domain
:
Ribulose 1,5-bisphosphate carboxylase-oxygenase
(40)
Synechococcus sp., strain pcc 6301 [TaxId: 1131]
(2)
3a
d1rsca1
A:148-475
3b
d1rscc1
C:148-475
3c
d1rscd1
D:148-475
3d
d1rsce1
E:148-475
3e
d1rscf1
F:148-475
3f
d1rscg1
G:148-475
3g
d1rsch1
H:148-475
3h
d1rscb1
B:148-475
[
close SCOP info
]
CATH Domains
(3, 24)
Info
all CATH domains
1a: CATH_1rscA01 (A:22-148)
1b: CATH_1rscB01 (B:22-148)
1c: CATH_1rscC01 (C:22-148)
1d: CATH_1rscD01 (D:22-148)
1e: CATH_1rscE01 (E:22-148)
1f: CATH_1rscF01 (F:22-148)
1g: CATH_1rscG01 (G:22-148)
1h: CATH_1rscH01 (H:22-148)
2a: CATH_1rscI00 (I:2-122)
2b: CATH_1rscJ00 (J:2-122)
2c: CATH_1rscK00 (K:2-122)
2d: CATH_1rscL00 (L:2-122)
2e: CATH_1rscM00 (M:2-122)
2f: CATH_1rscN00 (N:2-122)
2g: CATH_1rscO00 (O:2-122)
2h: CATH_1rscP00 (P:2-122)
3a: CATH_1rscA02 (A:149-467)
3b: CATH_1rscB02 (B:149-467)
3c: CATH_1rscC02 (C:149-467)
3d: CATH_1rscD02 (D:149-467)
3e: CATH_1rscE02 (E:149-467)
3f: CATH_1rscF02 (F:149-467)
3g: CATH_1rscG02 (G:149-467)
3h: CATH_1rscH02 (H:149-467)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.150, no name defined]
(49)
Synechococcus elongatus pcc 6301. Organism_taxid: 269084. Strain: pcc6301. Cell_line: s2.
(1)
1a
1rscA01
A:22-148
1b
1rscB01
B:22-148
1c
1rscC01
C:22-148
1d
1rscD01
D:22-148
1e
1rscE01
E:22-148
1f
1rscF01
F:22-148
1g
1rscG01
G:22-148
1h
1rscH01
H:22-148
Topology
:
Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase
(42)
Homologous Superfamily
:
[code=3.30.190.10, no name defined]
(35)
Synechococcus elongatus pcc 6301. Organism_taxid: 269084. Strain: pcc6301. Cell_line: s2.
(1)
2a
1rscI00
I:2-122
2b
1rscJ00
J:2-122
2c
1rscK00
K:2-122
2d
1rscL00
L:2-122
2e
1rscM00
M:2-122
2f
1rscN00
N:2-122
2g
1rscO00
O:2-122
2h
1rscP00
P:2-122
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Rubisco
(49)
Synechococcus elongatus pcc 6301. Organism_taxid: 269084. Strain: pcc6301. Cell_line: s2.
(1)
3a
1rscA02
A:149-467
3b
1rscB02
B:149-467
3c
1rscC02
C:149-467
3d
1rscD02
D:149-467
3e
1rscE02
E:149-467
3f
1rscF02
F:149-467
3g
1rscG02
G:149-467
3h
1rscH02
H:149-467
[
close CATH info
]
Pfam Domains
(3, 24)
Info
all PFAM domains
1a: PFAM_RuBisCO_large_1rscH01 (H:154-462)
1b: PFAM_RuBisCO_large_1rscH02 (H:154-462)
1c: PFAM_RuBisCO_large_1rscH03 (H:154-462)
1d: PFAM_RuBisCO_large_1rscH04 (H:154-462)
1e: PFAM_RuBisCO_large_1rscH05 (H:154-462)
1f: PFAM_RuBisCO_large_1rscH06 (H:154-462)
1g: PFAM_RuBisCO_large_1rscH07 (H:154-462)
1h: PFAM_RuBisCO_large_1rscH08 (H:154-462)
2a: PFAM_RuBisCO_large_N_1rscH09 (H:21-146)
2b: PFAM_RuBisCO_large_N_1rscH10 (H:21-146)
2c: PFAM_RuBisCO_large_N_1rscH11 (H:21-146)
2d: PFAM_RuBisCO_large_N_1rscH12 (H:21-146)
2e: PFAM_RuBisCO_large_N_1rscH13 (H:21-146)
2f: PFAM_RuBisCO_large_N_1rscH14 (H:21-146)
2g: PFAM_RuBisCO_large_N_1rscH15 (H:21-146)
2h: PFAM_RuBisCO_large_N_1rscH16 (H:21-146)
3a: PFAM_RuBisCO_small_1rscP01 (P:11-121)
3b: PFAM_RuBisCO_small_1rscP02 (P:11-121)
3c: PFAM_RuBisCO_small_1rscP03 (P:11-121)
3d: PFAM_RuBisCO_small_1rscP04 (P:11-121)
3e: PFAM_RuBisCO_small_1rscP05 (P:11-121)
3f: PFAM_RuBisCO_small_1rscP06 (P:11-121)
3g: PFAM_RuBisCO_small_1rscP07 (P:11-121)
3h: PFAM_RuBisCO_small_1rscP08 (P:11-121)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: RuBisCO_large]
(36)
Family
:
RuBisCO_large
(36)
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
(3)
1a
RuBisCO_large-1rscH01
H:154-462
1b
RuBisCO_large-1rscH02
H:154-462
1c
RuBisCO_large-1rscH03
H:154-462
1d
RuBisCO_large-1rscH04
H:154-462
1e
RuBisCO_large-1rscH05
H:154-462
1f
RuBisCO_large-1rscH06
H:154-462
1g
RuBisCO_large-1rscH07
H:154-462
1h
RuBisCO_large-1rscH08
H:154-462
Clan
:
no clan defined [family: RuBisCO_large_N]
(27)
Family
:
RuBisCO_large_N
(27)
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
(3)
2a
RuBisCO_large_N-1rscH09
H:21-146
2b
RuBisCO_large_N-1rscH10
H:21-146
2c
RuBisCO_large_N-1rscH11
H:21-146
2d
RuBisCO_large_N-1rscH12
H:21-146
2e
RuBisCO_large_N-1rscH13
H:21-146
2f
RuBisCO_large_N-1rscH14
H:21-146
2g
RuBisCO_large_N-1rscH15
H:21-146
2h
RuBisCO_large_N-1rscH16
H:21-146
Clan
:
no clan defined [family: RuBisCO_small]
(23)
Family
:
RuBisCO_small
(23)
Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) (Anacystis nidulans)
(2)
3a
RuBisCO_small-1rscP01
P:11-121
3b
RuBisCO_small-1rscP02
P:11-121
3c
RuBisCO_small-1rscP03
P:11-121
3d
RuBisCO_small-1rscP04
P:11-121
3e
RuBisCO_small-1rscP05
P:11-121
3f
RuBisCO_small-1rscP06
P:11-121
3g
RuBisCO_small-1rscP07
P:11-121
3h
RuBisCO_small-1rscP08
P:11-121
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (743 KB)
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