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1RS8
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (145 KB)
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(1)
Title
:
BOVINE ENDOTHELIAL NOS HEME DOMAIN WITH D-LYSINE-D-NITROARGININE AMIDE BOUND
Authors
:
M. Flinspach, H. Li, J. Jamal, W. Yang, H. Huang, R. B. Silverman, T. L. Po
Date
:
09 Dec 03 (Deposition) - 15 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nitric Oxide Synthase, Oxidoreductase, Heme-Enzyme
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Flinspach, H. Li, J. Jamal, W. Yang, H. Huang, R. B. Silverman, T. L. Poulos
Structures Of The Neuronal And Endothelial Nitric Oxide Synthase Heme Domain With D-Nitroarginine-Containing Dipeptide Inhibitors Bound.
Biochemistry V. 43 5181 2004
(for further references see the
PDB file header
)
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Hetero Components
(7, 13)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
3a: L-LYSYL-N~5~-[(Z)-(2,2-DIHYDROXYHY... (DP2a)
3b: L-LYSYL-N~5~-[(Z)-(2,2-DIHYDROXYHY... (DP2b)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Ba)
5b: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bb)
6a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
6b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
7a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
CAC
2
Ligand/Ion
CACODYLATE ION
3
DP2
2
Ligand/Ion
L-LYSYL-N~5~-[(Z)-(2,2-DIHYDROXYHYDRAZINO)(IMINO)METHYL]-L-ORNITHINAMIDE
4
GOL
2
Ligand/Ion
GLYCEROL
5
H4B
2
Ligand/Ion
5,6,7,8-TETRAHYDROBIOPTERIN
6
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
7
ZN
1
Ligand/Ion
ZINC ION
[
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]
Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:384 , LYS A:438 , ARG A:440 , GLY A:441
BINDING SITE FOR RESIDUE CAC A 850
02
AC2
SOFTWARE
GLY A:188 , TRP A:358 , SER A:428
BINDING SITE FOR RESIDUE ACT A 860
03
AC3
SOFTWARE
TYR B:83 , TRP B:324 , CYS B:384
BINDING SITE FOR RESIDUE CAC B 852
04
AC4
SOFTWARE
ILE B:190 , GLN B:191 , TRP B:358 , SER B:428 , HOH B:1074
BINDING SITE FOR RESIDUE ACT B 861
05
AC5
SOFTWARE
CYS A:96 , CYS A:101 , CYS B:96 , CYS B:101
BINDING SITE FOR RESIDUE ZN A 900
06
AC6
SOFTWARE
TRP A:180 , ARG A:185 , CYS A:186 , PHE A:355 , SER A:356 , TRP A:358 , GLU A:363 , TRP A:449 , PHE A:475 , TYR A:477 , H4B A:760 , DP2 A:792 , HOH A:902 , HOH A:917 , HOH A:1067 , HOH A:1098
BINDING SITE FOR RESIDUE HEM A 500
07
AC7
SOFTWARE
TRP B:180 , ARG B:185 , CYS B:186 , VAL B:187 , SER B:228 , PHE B:355 , GLY B:357 , TRP B:358 , GLU B:363 , TYR B:477 , H4B B:761 , DP2 B:793 , HOH B:886 , HOH B:929 , HOH B:1011 , HOH B:1044
BINDING SITE FOR RESIDUE HEM B 500
08
AC8
SOFTWARE
SER A:104 , ARG A:367 , ALA A:448 , TRP A:449 , HEM A:500 , GOL A:880 , HOH A:902 , HOH A:904 , HOH A:906 , HOH A:925 , TRP B:447 , PHE B:462 , HIS B:463 , GLN B:464 , GLU B:465
BINDING SITE FOR RESIDUE H4B A 760
09
AC9
SOFTWARE
LEU A:107 , GLN A:249 , PRO A:336 , VAL A:338 , SER A:356 , GLY A:357 , TRP A:358 , GLU A:363 , TYR A:477 , HEM A:500 , GOL A:880 , HOH A:902 , HOH A:931 , HOH A:939 , HOH A:1018 , HOH A:1068 , HOH A:1098 , HOH A:1116
BINDING SITE FOR RESIDUE DP2 A 792
10
BC1
SOFTWARE
TRP A:447 , PHE A:462 , HOH A:988 , SER B:104 , ARG B:367 , ALA B:448 , TRP B:449 , HEM B:500 , GOL B:882 , HOH B:884 , HOH B:896 , HOH B:926 , HOH B:945 , HOH B:1011
BINDING SITE FOR RESIDUE H4B B 761
11
BC2
SOFTWARE
LEU B:107 , SER B:248 , GLN B:249 , PRO B:336 , VAL B:338 , PHE B:355 , SER B:356 , GLY B:357 , TRP B:358 , GLU B:363 , TYR B:477 , HEM B:500 , GOL B:882 , HOH B:955 , HOH B:1011 , HOH B:1045 , HOH B:1046
BINDING SITE FOR RESIDUE DP2 B 793
12
BC3
SOFTWARE
VAL A:106 , ARG A:367 , HIS A:373 , H4B A:760 , DP2 A:792 , HOH A:931 , TRP B:76
BINDING SITE FOR RESIDUE GOL A 880
13
BC4
SOFTWARE
TRP A:76 , HOH A:988 , VAL B:106 , ARG B:367 , HIS B:373 , H4B B:761 , DP2 B:793 , HOH B:1046
BINDING SITE FOR RESIDUE GOL B 882
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: NOS (A:185-192,B:185-192)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
NOS
PS60001
Nitric oxide synthase (NOS) signature.
NOS3_BOVIN
185-192
2
A:185-192
B:185-192
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1rs8a_ (A:)
1b: SCOP_d1rs8b_ (B:)
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Superfamily
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Family
:
Nitric oxide (NO) synthase oxygenase domain
(313)
Protein domain
:
Nitric oxide (NO) synthase oxygenase domain
(298)
Cow (Bos taurus) [TaxId: 9913]
(85)
1a
d1rs8a_
A:
1b
d1rs8b_
B:
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1rs8A03 (A:314-336,A:359-424)
1b: CATH_1rs8B03 (B:314-336,B:359-424)
2a: CATH_1rs8A01 (A:84-201,A:228-238,A:342-356,A:426-450)
2b: CATH_1rs8B01 (B:84-201,B:228-238,B:342-356,B:426-450)
3a: CATH_1rs8A02 (A:202-227,A:242-313,A:477-481)
3b: CATH_1rs8B02 (B:202-227,B:242-313,B:477-481)
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(
)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Bovine Endothelial Nitric Oxide Synthase Heme Domain; Chain: A,domain 3
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 3
(105)
Cattle (Bos taurus)
(38)
1a
1rs8A03
A:314-336,A:359-424
1b
1rs8B03
B:314-336,B:359-424
Topology
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Homologous Superfamily
:
Nitric Oxide Synthase; Chain A, domain 1
(105)
Cattle (Bos taurus)
(38)
2a
1rs8A01
A:84-201,A:228-238,A:342-356,A:426-450
2b
1rs8B01
B:84-201,B:228-238,B:342-356,B:426-450
Topology
:
Nitric Oxide Synthase;Heme Domain; Chain A, domain 2
(105)
Homologous Superfamily
:
Nitric Oxide Synthase;Heme Domain;Chain A domain 2
(105)
Cattle (Bos taurus)
(38)
3a
1rs8A02
A:202-227,A:242-313,A:477-481
3b
1rs8B02
B:202-227,B:242-313,B:477-481
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NO_synthase_1rs8B01 (B:120-481)
1b: PFAM_NO_synthase_1rs8B02 (B:120-481)
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(
)
Organisms
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)
(
)
Clan
:
no clan defined [family: NO_synthase]
(140)
Family
:
NO_synthase
(140)
Bos taurus (Bovine)
(28)
1a
NO_synthase-1rs8B01
B:120-481
1b
NO_synthase-1rs8B02
B:120-481
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Asymmetric Unit 1
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