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1RRQ
Asym. Unit
Info
Asym.Unit (69 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
MUTY ADENINE GLYCOSYLASE IN COMPLEX WITH DNA CONTAINING AN A:OXOG PAIR
Authors
:
J. C. Fromme, A. Banerjee, S. J. Huang, G. L. Verdine
Date
:
08 Dec 03 (Deposition) - 17 Feb 04 (Release) - 31 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.22
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Dna Repair, Dna Glycosylase, 8-Oxoguanine, Protein-Dna Complex, Hydrolase/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Fromme, A. Banerjee, S. J. Huang, G. L. Verdine
Structural Basis For Removal Of Adenine Mispaired With 8-Oxoguanine By Muty Adenine Dna Glycosylase
Nature V. 427 652 2004
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPH... (8OGa)
2a: CALCIUM ION (CAa)
3a: IRON/SULFUR CLUSTER (SF4a)
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No.
Name
Count
Type
Full Name
1
8OG
1
Mod. Nucleotide
8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE
2
CA
1
Ligand/Ion
CALCIUM ION
3
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:118 , VAL A:123 , HOH A:457
BINDING SITE FOR RESIDUE CA A 367
2
AC2
SOFTWARE
ARG A:153 , LEU A:154 , CYS A:198 , CYS A:205 , CYS A:208 , CYS A:214 , ALA A:222
BINDING SITE FOR RESIDUE SF4 A 400
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1rrqa1 (A:9-229)
2a: SCOP_d1rrqa2 (A:234-360)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA-glycosylase
(77)
Superfamily
:
DNA-glycosylase
(77)
Family
:
Mismatch glycosylase
(22)
Protein domain
:
Catalytic domain of MutY
(17)
Bacillus stearothermophilus [TaxId: 1422]
(4)
1a
d1rrqa1
A:9-229
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nudix
(141)
Superfamily
:
Nudix
(141)
Family
:
MutY C-terminal domain-like
(5)
Protein domain
:
Adenine glycosylase MutY, C-terminal domain
(4)
Bacillus stearothermophilus [TaxId: 1422]
(4)
2a
d1rrqa2
A:234-360
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1rrqA03 (A:235-360)
2a: CATH_1rrqA01 (A:9-26,A:139-234)
3a: CATH_1rrqA02 (A:27-138)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Nucleoside Triphosphate Pyrophosphohydrolase
(89)
Homologous Superfamily
:
Nucleoside Triphosphate Pyrophosphohydrolase
(89)
[unclassified]
(3)
1a
1rrqA03
A:235-360
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Endonuclease Iii, domain 2
(65)
Homologous Superfamily
:
Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal)
(65)
[unclassified]
(30)
2a
1rrqA01
A:9-26,A:139-234
Topology
:
Endonuclease III; domain 1
(74)
Homologous Superfamily
:
Hypothetical protein; domain 2
(73)
[unclassified]
(31)
3a
1rrqA02
A:27-138
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (69 KB)
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