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1RRP
Biol. Unit 4
Info
Asym.Unit (118 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (220 KB)
Biol.Unit 4 (112 KB)
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(1)
Title
:
STRUCTURE OF THE RAN-GPPNHP-RANBD1 COMPLEX
Authors
:
I. R. Vetter, C. Nowak, T. Nishimoto, J. Kuhlmann, A. Wittinghofer
Date
:
15 Jan 99 (Deposition) - 18 May 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.96
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B,C,D (2x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Complex (Small Gtpase/Nuclear Protein), Small Gtpase, Nuclear Transport
(Keyword Search:
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)
Reference
:
I. R. Vetter, C. Nowak, T. Nishimoto, J. Kuhlmann, A. Wittinghofer
Structure Of A Ran-Binding Domain Complexed With Ran Bound To A Gtp Analogue: Implications For Nuclear Transport.
Nature V. 398 39 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GNP
1
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:24 , VAL A:40 , THR A:42 , GNP A:250
BINDING SITE FOR RESIDUE MG A 251
2
AC2
SOFTWARE
THR C:24 , VAL C:40 , THR C:42 , GNP C:250
BINDING SITE FOR RESIDUE MG C 251
3
AC3
SOFTWARE
GLY A:19 , GLY A:20 , THR A:21 , GLY A:22 , LYS A:23 , THR A:24 , THR A:25 , PHE A:35 , GLU A:36 , LYS A:37 , LYS A:38 , TYR A:39 , ALA A:41 , THR A:42 , ALA A:67 , GLY A:68 , ASN A:122 , LYS A:123 , ASP A:125 , SER A:150 , ALA A:151 , LYS A:152 , MG A:251
BINDING SITE FOR RESIDUE GNP A 250
4
AC4
SOFTWARE
GLY C:19 , GLY C:20 , THR C:21 , GLY C:22 , LYS C:23 , THR C:24 , THR C:25 , PHE C:35 , GLU C:36 , LYS C:37 , LYS C:38 , TYR C:39 , ALA C:41 , THR C:42 , ALA C:67 , GLY C:68 , ASN C:122 , LYS C:123 , ASP C:125 , SER C:150 , ALA C:151 , LYS C:152 , MG C:251
BINDING SITE FOR RESIDUE GNP C 250
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_051900 (R95I, chain A/C, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051900
R
95
I
RAN_HUMAN
Polymorphism
11546488
A/C
R
95
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RANBD1 (B:17-150,D:17-150|-|-|-)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RANBD1
PS50196
Ran binding domain type 1 profile.
RBP2_HUMAN
1171-1307
2012-2148
2309-2445
2911-3046
2
B:17-150
D:17-150
-
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1rrpb_ (B:)
1b: SCOP_d1rrpd_ (D:)
2a: SCOP_d1rrpa_ (A:)
2b: SCOP_d1rrpc_ (C:)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
PH domain-like barrel
(258)
Superfamily
:
PH domain-like
(257)
Family
:
Ran-binding domain
(7)
Protein domain
:
Nuclear pore complex protein Nup358
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1rrpb_
B:
1b
d1rrpd_
D:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Ran
(37)
Human (Homo sapiens) [TaxId: 9606]
(29)
2a
d1rrpa_
A:
2b
d1rrpc_
C:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1rrpA00 (A:8-211)
1b: CATH_1rrpC00 (C:8-187)
2a: CATH_1rrpB00 (B:17-150)
2b: CATH_1rrpD00 (D:17-150)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1rrpA00
A:8-211
1b
1rrpC00
C:8-187
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
PH-domain like
(150)
Homologous Superfamily
:
Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
(147)
Human (Homo sapiens)
(85)
2a
1rrpB00
B:17-150
2b
1rrpD00
D:17-150
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Ras_1rrpC01 (C:12-170)
1b: PFAM_Ras_1rrpC02 (C:12-170)
2a: PFAM_Ran_BP1_1rrpD01 (D:29-150)
2b: PFAM_Ran_BP1_1rrpD02 (D:29-150)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-1rrpC01
C:12-170
1b
Ras-1rrpC02
C:12-170
Clan
:
PH
(111)
Family
:
Ran_BP1
(9)
Homo sapiens (Human)
(6)
2a
Ran_BP1-1rrpD01
D:29-150
2b
Ran_BP1-1rrpD02
D:29-150
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Asym.Unit (118 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (57 KB)
Header - Biol.Unit 2
Biol.Unit 3 (220 KB)
Header - Biol.Unit 3
Biol.Unit 4 (112 KB)
Header - Biol.Unit 4
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