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1RQX
Asym. Unit
Info
Asym.Unit (218 KB)
Biol.Unit 1 (213 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACC DEAMINASE COMPLEXED WITH INHIBITOR
Authors
:
S. Karthikeyan, Z. Zhao, C. L. Kao, Q. Zhou, Z. Tao, H. Zhang, H. W. Liu
Date
:
07 Dec 03 (Deposition) - 17 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Accd, Complex, Crystal, Plp, Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Karthikeyan, Z. Zhao, C. L. Kao, Q. Zhou, Z. Tao, H. Zhang, H. W. Liu
Structural Analysis Of 1-Aminocyclopropane-1-Carboxylate Deaminase: Observation Of An Aminyl Intermediate And Identification Of Tyr 294 As The Active-Site Nucleophile.
Angew. Chem. Int. Ed. Engl. V. 43 3425 2004
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: 1-AMINOCYCLOPROPYLPHOSPHONATE (MLPa)
1b: 1-AMINOCYCLOPROPYLPHOSPHONATE (MLPb)
1c: 1-AMINOCYCLOPROPYLPHOSPHONATE (MLPc)
1d: 1-AMINOCYCLOPROPYLPHOSPHONATE (MLPd)
2a: PYRIDOXAL-5'-PHOSPHATE (PLPa)
2b: PYRIDOXAL-5'-PHOSPHATE (PLPb)
2c: PYRIDOXAL-5'-PHOSPHATE (PLPc)
2d: PYRIDOXAL-5'-PHOSPHATE (PLPd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MLP
4
Ligand/Ion
1-AMINOCYCLOPROPYLPHOSPHONATE
2
PLP
4
Ligand/Ion
PYRIDOXAL-5'-PHOSPHATE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:50 , LYS A:51 , LYS A:54 , ASN A:79 , SER A:197 , VAL A:198 , THR A:199 , GLY A:200 , THR A:202 , TYR A:294 , GLU A:295 , LEU A:322 , GLY A:323 , GLY A:324 , MLP A:501 , HOH A:535 , HOH A:539
BINDING SITE FOR RESIDUE PLP A 401
2
AC2
SOFTWARE
ASN B:50 , LYS B:51 , LYS B:54 , ASN B:79 , CYS B:196 , SER B:197 , VAL B:198 , THR B:199 , GLY B:200 , SER B:201 , THR B:202 , TYR B:294 , GLU B:295 , LEU B:322 , GLY B:323 , GLY B:324 , MLP B:501 , HOH B:507 , HOH B:530
BINDING SITE FOR RESIDUE PLP B 401
3
AC3
SOFTWARE
ASN C:50 , LYS C:51 , LYS C:54 , ASN C:79 , SER C:163 , SER C:197 , VAL C:198 , THR C:199 , GLY C:200 , SER C:201 , THR C:202 , TYR C:294 , GLU C:295 , LEU C:322 , GLY C:323 , GLY C:324 , MLP C:501 , HOH C:509 , HOH C:539
BINDING SITE FOR RESIDUE PLP C 401
4
AC4
SOFTWARE
ASN D:50 , LYS D:51 , LYS D:54 , ASN D:79 , CYS D:196 , SER D:197 , VAL D:198 , THR D:199 , GLY D:200 , SER D:201 , THR D:202 , TYR D:294 , GLU D:295 , LEU D:322 , GLY D:323 , GLY D:324 , MLP D:501 , HOH D:556 , HOH D:569
BINDING SITE FOR RESIDUE PLP D 401
5
AC5
SOFTWARE
LYS A:51 , SER A:78 , ASN A:79 , GLN A:80 , TYR A:294 , PLP A:401 , HOH A:504 , HOH A:558
BINDING SITE FOR RESIDUE MLP A 501
6
AC6
SOFTWARE
LYS B:51 , SER B:78 , ASN B:79 , GLN B:80 , TYR B:294 , PLP B:401 , HOH B:513
BINDING SITE FOR RESIDUE MLP B 501
7
AC7
SOFTWARE
LYS C:51 , SER C:78 , ASN C:79 , GLN C:80 , TYR C:294 , PLP C:401 , HOH C:510
BINDING SITE FOR RESIDUE MLP C 501
8
AC8
SOFTWARE
LYS D:51 , SER D:78 , ASN D:79 , GLN D:80 , THR D:199 , TYR D:294 , PLP D:401 , HOH D:536
BINDING SITE FOR RESIDUE MLP D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1rqxa_ (A:)
1b: SCOP_d1rqxb_ (B:)
1c: SCOP_d1rqxc_ (C:)
1d: SCOP_d1rqxd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Superfamily
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(165)
Family
:
Tryptophan synthase beta subunit-like PLP-dependent enzymes
(120)
Protein domain
:
1-aminocyclopropane-1-carboxylate deaminase
(12)
Pseudomonas sp., strain ACP [TaxId: 306]
(6)
1a
d1rqxa_
A:
1b
d1rqxb_
B:
1c
d1rqxc_
C:
1d
d1rqxd_
D:
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1rqxA01 (A:1-45,A:165-338)
1b: CATH_1rqxB01 (B:1-45,B:165-338)
1c: CATH_1rqxC01 (C:1-45,C:165-338)
1d: CATH_1rqxD01 (D:1-45,D:165-338)
1e: CATH_1rqxC02 (C:66-164)
1f: CATH_1rqxA02 (A:66-164)
1g: CATH_1rqxD02 (D:66-164)
1h: CATH_1rqxB02 (B:66-164)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1100, no name defined]
(77)
Acp (Pseudomonas sp)
(6)
1a
1rqxA01
A:1-45,A:165-338
1b
1rqxB01
B:1-45,B:165-338
1c
1rqxC01
C:1-45,C:165-338
1d
1rqxD01
D:1-45,D:165-338
1e
1rqxC02
C:66-164
1f
1rqxA02
A:66-164
1g
1rqxD02
D:66-164
1h
1rqxB02
B:66-164
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PALP_1rqxD01 (D:10-323)
1b: PFAM_PALP_1rqxD02 (D:10-323)
1c: PFAM_PALP_1rqxD03 (D:10-323)
1d: PFAM_PALP_1rqxD04 (D:10-323)
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Clan
:
no clan defined [family: PALP]
(67)
Family
:
PALP
(67)
Pseudomonas sp. (strain ACP)
(6)
1a
PALP-1rqxD01
D:10-323
1b
PALP-1rqxD02
D:10-323
1c
PALP-1rqxD03
D:10-323
1d
PALP-1rqxD04
D:10-323
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