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1RQJ
Biol. Unit 1
Info
Asym.Unit (108 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (53 KB)
Biol.Unit 3 (102 KB)
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(1)
Title
:
ACTIVE CONFORMATION OF FARNESYL PYROPHOSPHATE SYNTHASE BOUND TO ISOPENTYL PYROPHOSPHATE AND RISEDRONATE
Authors
:
D. J. Hosfield, Y. Zhang, D. R. Dougan, A. Brooun, L. W. Tari, R. V. Swanso
Date
:
05 Dec 03 (Deposition) - 02 Mar 04 (Release) - 22 May 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Bisphosphonate, Isoprenyl Synthase, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
D. J. Hosfield, Y. Zhang, D. R. Dougan, A. Brooun, L. W. Tari, R. V. Swanson, J. Finn
Structural Basis For Bisphosphonate-Mediated Inhibition Of Isoprenoid Biosynthesis
J. Biol. Chem. V. 279 8526 2004
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIP... (IPEa)
1b: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIP... (IPEb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
3a: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDEN... (RISa)
3b: 1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDEN... (RISb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
IPE
1
Ligand/Ion
3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
RIS
1
Ligand/Ion
1-HYDROXY-2-(3-PYRIDINYL)ETHYLIDENE BIS-PHOSPHONIC ACID
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Sites
(5, 5)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: AC7 (SOFTWARE)
5: AC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASP A:105 , ASP A:111 , RIS A:901 , MG A:909 , HOH A:933 , HOH A:945
BINDING SITE FOR RESIDUE MG A 907
2
AC5
SOFTWARE
ASP A:244 , RIS A:901 , HOH A:918 , HOH A:1031 , HOH A:1032
BINDING SITE FOR RESIDUE MG A 908
3
AC6
SOFTWARE
ASP A:105 , ASP A:111 , RIS A:901 , MG A:907 , HOH A:922 , HOH A:926 , HOH A:1034
BINDING SITE FOR RESIDUE MG A 909
4
AC7
SOFTWARE
GLY A:65 , LYS A:66 , ARG A:69 , HIS A:98 , ARG A:117 , THR A:203 , PHE A:240 , GLN A:241 , RIS A:901 , HOH A:912 , HOH A:913 , HOH A:917 , HOH A:919 , HOH A:973 , HOH A:997
BINDING SITE FOR RESIDUE IPE A 900
5
AC8
SOFTWARE
ASP A:105 , ASP A:111 , ARG A:116 , GLN A:179 , LYS A:202 , THR A:203 , GLN A:241 , ASP A:244 , LYS A:258 , IPE A:900 , MG A:907 , MG A:908 , MG A:909 , HOH A:918 , HOH A:922 , HOH A:933 , HOH A:945 , HOH A:1031 , HOH A:1032 , HOH A:1033 , HOH A:1034
BINDING SITE FOR RESIDUE RIS A 901
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: POLYPRENYL_SYNTHASE_1 (A:102-118)
2: POLYPRENYL_SYNTHASE_2 (A:236-248)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLYPRENYL_SYNTHASE_1
PS00723
Polyprenyl synthases signature 1.
ISPA_ECOLI
81-97
1
A:102-118
-
2
POLYPRENYL_SYNTHASE_2
PS00444
Polyprenyl synthases signature 2.
ISPA_ECOLI
215-227
1
A:236-248
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1rqja_ (A:)
1b: SCOP_d1rqjb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
Terpenoid synthases
(196)
Superfamily
:
Terpenoid synthases
(196)
Family
:
Isoprenyl diphosphate synthases
(57)
Protein domain
:
Farnesyl diphosphate synthase (geranyltranstransferase)
(8)
Escherichia coli [TaxId: 562]
(2)
1a
d1rqja_
A:
1b
d1rqjb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1rqjA00 (A:22-320)
1b: CATH_1rqjB00 (B:23-320)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Farnesyl Diphosphate Synthase
(109)
Homologous Superfamily
:
Farnesyl Diphosphate Synthase
(109)
Escherichia coli. Organism_taxid: 562.
(2)
1a
1rqjA00
A:22-320
1b
1rqjB00
B:23-320
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_polyprenyl_synt_1rqjB01 (B:53-316)
1b: PFAM_polyprenyl_synt_1rqjB02 (B:53-316)
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Clan
:
no clan defined [family: polyprenyl_synt]
(86)
Family
:
polyprenyl_synt
(86)
Escherichia coli (strain K12)
(2)
1a
polyprenyl_synt-1rqjB01
B:53-316
1b
polyprenyl_synt-1rqjB02
B:53-316
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Chain A
Asymmetric Unit 1
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Asym.Unit (108 KB)
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Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
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Biol.Unit 3 (102 KB)
Header - Biol.Unit 3
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