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1RQF
Biol. Unit 1
Info
Asym.Unit (235 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (61 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (61 KB)
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(1)
Title
:
STRUCTURE OF CK2 BETA SUBUNIT CRYSTALLIZED IN THE PRESENCE OF A P21WAF1 PEPTIDE
Authors
:
L. Bertrand, M. F. Sayed, X. -Y. Pei, E. Parisini, V. Dhanaraj, V. M. Bolanos-Garcia, J. E. Allende, T. L. Blundell
Date
:
05 Dec 03 (Deposition) - 05 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.89
Chains
:
Asym. Unit : A,B,D,E,G,H,J,K,M,N,O,P,S,T
Biol. Unit 1: A,B,M,N (1x)
Biol. Unit 2: D,E,O,P (1x)
Biol. Unit 3: G,H (1x)
Biol. Unit 4: J,K,S,T (1x)
Keywords
:
Casein Kinase Beta Subunit, Ser/Thr Protein Kinase, Cyclin- Dependent Kinase Inhibitor, Zn Finger, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Bertrand, M. F. Sayed, X. Y. Pei, E. Parisini, V. Dhanaraj, V. M. Bolanos-Garcia, J. E. Allende, T. L. Blundell
Structure Of The Regulatory Subunit Of Ck2 In The Presence Of A P21Waf1 Peptide Demonstrates Flexibility Of The Acidic Loop.
Acta Crystallogr. , Sect. D V. 60 1698 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: (UNKa)
1aa: (UNKaa)
1ab: (UNKab)
1b: (UNKb)
1c: (UNKc)
1d: (UNKd)
1e: (UNKe)
1f: (UNKf)
1g: (UNKg)
1h: (UNKh)
1i: (UNKi)
1j: (UNKj)
1k: (UNKk)
1l: (UNKl)
1m: (UNKm)
1n: (UNKn)
1o: (UNKo)
1p: (UNKp)
1q: (UNKq)
1r: (UNKr)
1s: (UNKs)
1t: (UNKt)
1u: (UNKu)
1v: (UNKv)
1w: (UNKw)
1x: (UNKx)
1y: (UNKy)
1z: (UNKz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:109 , CYS A:114 , CYS A:137 , CYS A:140
BINDING SITE FOR RESIDUE ZN A 179
2
AC2
SOFTWARE
CYS B:109 , CYS B:114 , CYS B:137 , CYS B:140
BINDING SITE FOR RESIDUE ZN B 179
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: CK2_BETA (A:109-140,B:109-140)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CK2_BETA
PS01101
Casein kinase II regulatory subunit signature.
CSK2B_XENLA
109-140
2
A:109-140
B:109-140
-
-
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1rqfa_ (A:)
1b: SCOP_d1rqfb_ (B:)
1c: SCOP_d1rqfd_ (D:)
1d: SCOP_d1rqfe_ (E:)
1e: SCOP_d1rqfg_ (G:)
1f: SCOP_d1rqfh_ (H:)
1g: SCOP_d1rqfj_ (J:)
1h: SCOP_d1rqfk_ (K:)
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Organisms
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)
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Casein kinase II beta subunit
(7)
Family
:
Casein kinase II beta subunit
(7)
Protein domain
:
Casein kinase II beta subunit
(7)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(1)
1a
d1rqfa_
A:
1b
d1rqfb_
B:
1c
d1rqfd_
D:
1d
d1rqfe_
E:
1e
d1rqfg_
G:
1f
d1rqfh_
H:
1g
d1rqfj_
J:
1h
d1rqfk_
K:
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1rqfD01 (D:7-107)
1b: CATH_1rqfB01 (B:7-107)
1c: CATH_1rqfK01 (K:7-107)
1d: CATH_1rqfG01 (G:7-107)
1e: CATH_1rqfH01 (H:7-107)
1f: CATH_1rqfA01 (A:7-107)
1g: CATH_1rqfE01 (E:7-107)
1h: CATH_1rqfJ01 (J:7-107)
2a: CATH_1rqfD02 (D:108-177)
2b: CATH_1rqfA02 (A:108-178)
2c: CATH_1rqfE02 (E:108-178)
2d: CATH_1rqfJ02 (J:108-178)
2e: CATH_1rqfB02 (B:108-167)
2f: CATH_1rqfG02 (G:108-167)
2g: CATH_1rqfH02 (H:108-167)
2h: CATH_1rqfK02 (K:108-167)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
protein kinase ck2 holoenzyme, chain C, domain 1
(3)
Homologous Superfamily
:
protein kinase ck2 holoenzyme, chain C, domain 1
(3)
African clawed frog (Xenopus laevis)
(1)
1a
1rqfD01
D:7-107
1b
1rqfB01
B:7-107
1c
1rqfK01
K:7-107
1d
1rqfG01
G:7-107
1e
1rqfH01
H:7-107
1f
1rqfA01
A:7-107
1g
1rqfE01
E:7-107
1h
1rqfJ01
J:7-107
Class
:
Mainly Beta
(13760)
Architecture
:
Single Sheet
(341)
Topology
:
N-terminal domain of TfIIb
(166)
Homologous Superfamily
:
[code=2.20.25.20, no name defined]
(3)
African clawed frog (Xenopus laevis)
(1)
2a
1rqfD02
D:108-177
2b
1rqfA02
A:108-178
2c
1rqfE02
E:108-178
2d
1rqfJ02
J:108-178
2e
1rqfB02
B:108-167
2f
1rqfG02
G:108-167
2g
1rqfH02
H:108-167
2h
1rqfK02
K:108-167
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_CK_II_beta_1rqfK01 (K:8-178)
1b: PFAM_CK_II_beta_1rqfK02 (K:8-178)
1c: PFAM_CK_II_beta_1rqfK03 (K:8-178)
1d: PFAM_CK_II_beta_1rqfK04 (K:8-178)
1e: PFAM_CK_II_beta_1rqfK05 (K:8-178)
1f: PFAM_CK_II_beta_1rqfK06 (K:8-178)
1g: PFAM_CK_II_beta_1rqfK07 (K:8-178)
1h: PFAM_CK_II_beta_1rqfK08 (K:8-178)
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Clans
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(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: CK_II_beta]
(4)
Family
:
CK_II_beta
(4)
Xenopus laevis (African clawed frog)
(1)
1a
CK_II_beta-1rqfK01
K:8-178
1b
CK_II_beta-1rqfK02
K:8-178
1c
CK_II_beta-1rqfK03
K:8-178
1d
CK_II_beta-1rqfK04
K:8-178
1e
CK_II_beta-1rqfK05
K:8-178
1f
CK_II_beta-1rqfK06
K:8-178
1g
CK_II_beta-1rqfK07
K:8-178
1h
CK_II_beta-1rqfK08
K:8-178
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Show PDB file:
Asym.Unit (235 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (61 KB)
Header - Biol.Unit 2
Biol.Unit 3 (58 KB)
Header - Biol.Unit 3
Biol.Unit 4 (61 KB)
Header - Biol.Unit 4
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