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1RPQ
Biol. Unit 3
Info
Asym.Unit (151 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (39 KB)
Biol.Unit 5 (72 KB)
Biol.Unit 6 (72 KB)
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(1)
Title
:
HIGH AFFINITY IGE RECEPTOR (ALPHA CHAIN) COMPLEXED WITH TIGHT-BINDING E131 'ZETA' PEPTIDE FROM PHAGE DISPLAY
Authors
:
J. Stamos, C. Eigenbrot, G. R. Nakamura, M. E. Reynolds, J. P. Yin, H. B. L W. J. Fairbrother, M. A. Starovasnik
Date
:
03 Dec 03 (Deposition) - 20 Jul 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,W,X,Y,Z
Biol. Unit 1: A,W (1x)
Biol. Unit 2: B,X (1x)
Biol. Unit 3: C,Y (1x)
Biol. Unit 4: D,Z (1x)
Biol. Unit 5: A,C,W,Y (1x)
Biol. Unit 6: B,D,X,Z (1x)
Keywords
:
Receptor-Peptide Complex, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Stamos, C. Eigenbrot, G. R. Nakamura, M. E. Reynolds, J. P. Yin, H. B. Lowman, W. J. Fairbrother, M. A. Starovasnik
Convergent Recognition Of The Ige Binding Site On The High-Affinity Ige Receptor.
Structure V. 12 1289 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 12)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
4b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
4c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
4d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CIT
1
Ligand/Ion
CITRIC ACID
3
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5
SO4
-1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: CC3 (SOFTWARE)
05: CC7 (SOFTWARE)
06: CC8 (SOFTWARE)
07: CC9 (SOFTWARE)
08: DC1 (SOFTWARE)
09: DC2 (SOFTWARE)
10: DC3 (SOFTWARE)
11: DC4 (SOFTWARE)
12: DC5 (SOFTWARE)
13: DC6 (SOFTWARE)
14: DC7 (SOFTWARE)
15: DC8 (SOFTWARE)
16: FC2 (SOFTWARE)
17: FC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , NAG A:222 , HIS Y:5
BINDING SITE FOR RESIDUE NAG A 221
02
AC2
SOFTWARE
ASN A:57 , NAG A:221 , NAG A:223 , TYR Y:8
BINDING SITE FOR RESIDUE NAG A 222
03
AC3
SOFTWARE
NAG A:222 , TYR Y:8 , CYS Y:19 , TYR Y:20 , VAL Y:21
BINDING SITE FOR RESIDUE NAG A 223
04
CC3
SOFTWARE
ASN B:140 , TRP C:130
BINDING SITE FOR RESIDUE NDG B 340
05
CC7
SOFTWARE
GLY C:19 , GLU C:20 , ASN C:21 , NAG C:222
BINDING SITE FOR RESIDUE NAG C 221
06
CC8
SOFTWARE
NAG C:221
BINDING SITE FOR RESIDUE NAG C 222
07
CC9
SOFTWARE
HIS C:41 , ASN C:42 , GLU C:61 , SER C:63 , NAG C:243 , GLY D:43 , SER D:44
BINDING SITE FOR RESIDUE NAG C 242
08
DC1
SOFTWARE
GLU C:61 , SER C:63 , NAG C:242 , BMA C:244
BINDING SITE FOR RESIDUE NAG C 243
09
DC2
SOFTWARE
PHE C:60 , NAG C:243 , BMA C:245 , BMA C:246
BINDING SITE FOR RESIDUE BMA C 244
10
DC3
SOFTWARE
BMA C:244
BINDING SITE FOR RESIDUE BMA C 245
11
DC4
SOFTWARE
BMA C:244
BINDING SITE FOR RESIDUE BMA C 246
12
DC5
SOFTWARE
GLY C:100 , ASN C:140
BINDING SITE FOR RESIDUE NDG C 340
13
DC6
SOFTWARE
ASN C:166 , NAG C:367
BINDING SITE FOR RESIDUE NAG C 366
14
DC7
SOFTWARE
ASN B:29 , VAL B:34 , NAG C:366 , BMA C:368
BINDING SITE FOR RESIDUE NAG C 367
15
DC8
SOFTWARE
NAG C:367
BINDING SITE FOR RESIDUE BMA C 368
16
FC2
SOFTWARE
ARG A:111 , HIS Y:5 , PHE Y:6
BINDING SITE FOR RESIDUE SO4 A 401
17
FC4
SOFTWARE
ASP A:114 , TYR A:116 , TYR C:116 , LYS C:117 , TYR C:131 , LYS C:154 , GLN C:157
BINDING SITE FOR RESIDUE CIT C 403
[
close Site info
]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020091 (K59R, chain C, )
2: VAR_020092 (S76N, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020091
K
84
R
FCERA_HUMAN
Polymorphism
2298804
C
K
59
R
2
UniProt
VAR_020092
S
101
N
FCERA_HUMAN
Polymorphism
2298805
C
S
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1rpqa1 (A:4-85)
1b: SCOP_d1rpqa2 (A:86-171)
1c: SCOP_d1rpqb1 (B:4-85)
1d: SCOP_d1rpqb2 (B:86-171)
1e: SCOP_d1rpqc1 (C:4-85)
1f: SCOP_d1rpqc2 (C:86-171)
1g: SCOP_d1rpqd1 (D:4-85)
1h: SCOP_d1rpqd2 (D:86-171)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
IgE high affinity receptor alpha subunit
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1rpqa1
A:4-85
1b
d1rpqa2
A:86-171
1c
d1rpqb1
B:4-85
1d
d1rpqb2
B:86-171
1e
d1rpqc1
C:4-85
1f
d1rpqc2
C:86-171
1g
d1rpqd1
D:4-85
1h
d1rpqd2
D:86-171
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1rpqD01 (D:4-84)
1b: CATH_1rpqC01 (C:4-84)
1c: CATH_1rpqA01 (A:4-84)
1d: CATH_1rpqB01 (B:4-84)
1e: CATH_1rpqA02 (A:85-171)
1f: CATH_1rpqB02 (B:85-171)
1g: CATH_1rpqC02 (C:85-171)
1h: CATH_1rpqD02 (D:85-171)
View:
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1rpqD01
D:4-84
1b
1rpqC01
C:4-84
1c
1rpqA01
A:4-84
1d
1rpqB01
B:4-84
1e
1rpqA02
A:85-171
1f
1rpqB02
B:85-171
1g
1rpqC02
C:85-171
1h
1rpqD02
D:85-171
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Ig_2_1rpqD01 (D:87-169)
1b: PFAM_Ig_2_1rpqD02 (D:87-169)
1c: PFAM_Ig_2_1rpqD03 (D:87-169)
1d: PFAM_Ig_2_1rpqD04 (D:87-169)
1e: PFAM_Ig_2_1rpqD05 (D:87-169)
1f: PFAM_Ig_2_1rpqD06 (D:87-169)
1g: PFAM_Ig_2_1rpqD07 (D:87-169)
1h: PFAM_Ig_2_1rpqD08 (D:87-169)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
1a
Ig_2-1rpqD01
D:87-169
1b
Ig_2-1rpqD02
D:87-169
1c
Ig_2-1rpqD03
D:87-169
1d
Ig_2-1rpqD04
D:87-169
1e
Ig_2-1rpqD05
D:87-169
1f
Ig_2-1rpqD06
D:87-169
1g
Ig_2-1rpqD07
D:87-169
1h
Ig_2-1rpqD08
D:87-169
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]
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