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1RPQ
Asym. Unit
Info
Asym.Unit (151 KB)
Biol.Unit 1 (39 KB)
Biol.Unit 2 (38 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (39 KB)
Biol.Unit 5 (72 KB)
Biol.Unit 6 (72 KB)
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(1)
Title
:
HIGH AFFINITY IGE RECEPTOR (ALPHA CHAIN) COMPLEXED WITH TIGHT-BINDING E131 'ZETA' PEPTIDE FROM PHAGE DISPLAY
Authors
:
J. Stamos, C. Eigenbrot, G. R. Nakamura, M. E. Reynolds, J. P. Yin, H. B. L W. J. Fairbrother, M. A. Starovasnik
Date
:
03 Dec 03 (Deposition) - 20 Jul 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,W,X,Y,Z
Biol. Unit 1: A,W (1x)
Biol. Unit 2: B,X (1x)
Biol. Unit 3: C,Y (1x)
Biol. Unit 4: D,Z (1x)
Biol. Unit 5: A,C,W,Y (1x)
Biol. Unit 6: B,D,X,Z (1x)
Keywords
:
Receptor-Peptide Complex, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Stamos, C. Eigenbrot, G. R. Nakamura, M. E. Reynolds, J. P. Yin, H. B. Lowman, W. J. Fairbrother, M. A. Starovasnik
Convergent Recognition Of The Ige Binding Site On The High-Affinity Ige Receptor.
Structure V. 12 1289 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 50)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
1m: BETA-D-MANNOSE (BMAm)
1n: BETA-D-MANNOSE (BMAn)
1o: BETA-D-MANNOSE (BMAo)
1p: BETA-D-MANNOSE (BMAp)
2a: CITRIC ACID (CITa)
2b: CITRIC ACID (CITb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
4b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
4c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
4d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
16
Ligand/Ion
BETA-D-MANNOSE
2
CIT
2
Ligand/Ion
CITRIC ACID
3
NAG
26
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:21 , NAG A:222 , HIS Y:5
BINDING SITE FOR RESIDUE NAG A 221
02
AC2
SOFTWARE
ASN A:57 , NAG A:221 , NAG A:223 , TYR Y:8
BINDING SITE FOR RESIDUE NAG A 222
03
AC3
SOFTWARE
NAG A:222 , TYR Y:8 , CYS Y:19 , TYR Y:20 , VAL Y:21
BINDING SITE FOR RESIDUE NAG A 223
04
AC4
SOFTWARE
HIS A:41 , ASN A:42 , GLU A:61 , SER A:63 , GLY A:64 , NAG A:243
BINDING SITE FOR RESIDUE NAG A 242
05
AC5
SOFTWARE
GLU A:61 , NAG A:242 , BMA A:244
BINDING SITE FOR RESIDUE NAG A 243
06
AC6
SOFTWARE
NAG A:243 , BMA A:245 , BMA A:246
BINDING SITE FOR RESIDUE BMA A 244
07
AC7
SOFTWARE
BMA A:244
BINDING SITE FOR RESIDUE BMA A 245
08
AC8
SOFTWARE
BMA A:244
BINDING SITE FOR RESIDUE BMA A 246
09
AC9
SOFTWARE
ASN A:140 , TRP D:130
BINDING SITE FOR RESIDUE NDG A 340
10
BC1
SOFTWARE
ASN A:166 , NAG A:367
BINDING SITE FOR RESIDUE NAG A 366
11
BC2
SOFTWARE
NAG A:366 , BMA A:368
BINDING SITE FOR RESIDUE NAG A 367
12
BC3
SOFTWARE
NAG A:367
BINDING SITE FOR RESIDUE BMA A 368
13
BC4
SOFTWARE
ASN B:21 , NAG B:222
BINDING SITE FOR RESIDUE NAG B 221
14
BC5
SOFTWARE
NAG B:221 , NAG B:223 , HIS Z:5 , TYR Z:8
BINDING SITE FOR RESIDUE NAG B 222
15
BC6
SOFTWARE
NAG B:222 , CYS Z:19 , TYR Z:20 , VAL Z:21
BINDING SITE FOR RESIDUE NAG B 223
16
BC7
SOFTWARE
ASN B:42 , GLU B:61 , SER B:63 , NAG B:243
BINDING SITE FOR RESIDUE NAG B 242
17
BC8
SOFTWARE
GLU B:61 , GLU B:82 , NAG B:242 , BMA B:244
BINDING SITE FOR RESIDUE NAG B 243
18
BC9
SOFTWARE
NAG B:243 , BMA B:245 , BMA B:246
BINDING SITE FOR RESIDUE BMA B 244
19
CC1
SOFTWARE
BMA B:244
BINDING SITE FOR RESIDUE BMA B 245
20
CC2
SOFTWARE
BMA B:244
BINDING SITE FOR RESIDUE BMA B 246
21
CC3
SOFTWARE
ASN B:140 , TRP C:130
BINDING SITE FOR RESIDUE NDG B 340
22
CC4
SOFTWARE
ASN B:166 , NAG B:367
BINDING SITE FOR RESIDUE NAG B 366
23
CC5
SOFTWARE
NAG B:366 , BMA B:368
BINDING SITE FOR RESIDUE NAG B 367
24
CC6
SOFTWARE
GLU B:47 , NAG B:367
BINDING SITE FOR RESIDUE BMA B 368
25
CC7
SOFTWARE
GLY C:19 , GLU C:20 , ASN C:21 , NAG C:222
BINDING SITE FOR RESIDUE NAG C 221
26
CC8
SOFTWARE
NAG C:221
BINDING SITE FOR RESIDUE NAG C 222
27
CC9
SOFTWARE
HIS C:41 , ASN C:42 , GLU C:61 , SER C:63 , NAG C:243 , GLY D:43 , SER D:44
BINDING SITE FOR RESIDUE NAG C 242
28
DC1
SOFTWARE
GLU C:61 , SER C:63 , NAG C:242 , BMA C:244
BINDING SITE FOR RESIDUE NAG C 243
29
DC2
SOFTWARE
PHE C:60 , NAG C:243 , BMA C:245 , BMA C:246
BINDING SITE FOR RESIDUE BMA C 244
30
DC3
SOFTWARE
BMA C:244
BINDING SITE FOR RESIDUE BMA C 245
31
DC4
SOFTWARE
BMA C:244
BINDING SITE FOR RESIDUE BMA C 246
32
DC5
SOFTWARE
GLY C:100 , ASN C:140
BINDING SITE FOR RESIDUE NDG C 340
33
DC6
SOFTWARE
ASN C:166 , NAG C:367
BINDING SITE FOR RESIDUE NAG C 366
34
DC7
SOFTWARE
ASN B:29 , VAL B:34 , NAG C:366 , BMA C:368
BINDING SITE FOR RESIDUE NAG C 367
35
DC8
SOFTWARE
NAG C:367
BINDING SITE FOR RESIDUE BMA C 368
36
DC9
SOFTWARE
ASN D:21 , ASN D:57 , NAG D:222
BINDING SITE FOR RESIDUE NAG D 221
37
EC1
SOFTWARE
NAG D:221
BINDING SITE FOR RESIDUE NAG D 222
38
EC2
SOFTWARE
ASN D:42 , GLU D:61 , SER D:63 , NAG D:243
BINDING SITE FOR RESIDUE NAG D 242
39
EC3
SOFTWARE
PHE D:60 , GLU D:61 , NAG D:242 , BMA D:244
BINDING SITE FOR RESIDUE NAG D 243
40
EC4
SOFTWARE
PHE D:60 , NAG D:243 , BMA D:245 , BMA D:246
BINDING SITE FOR RESIDUE BMA D 244
41
EC5
SOFTWARE
BMA D:244
BINDING SITE FOR RESIDUE BMA D 245
42
EC6
SOFTWARE
BMA D:244
BINDING SITE FOR RESIDUE BMA D 246
43
EC7
SOFTWARE
GLY D:100 , ASN D:140
BINDING SITE FOR RESIDUE NDG D 340
44
EC8
SOFTWARE
ASN A:30 , PRO D:164 , ASN D:166 , NAG D:367
BINDING SITE FOR RESIDUE NAG D 366
45
EC9
SOFTWARE
ASN A:29 , VAL A:34 , NAG D:366 , BMA D:368
BINDING SITE FOR RESIDUE NAG D 367
46
FC1
SOFTWARE
NAG D:367
BINDING SITE FOR RESIDUE BMA D 368
47
FC2
SOFTWARE
ARG A:111 , HIS Y:5 , PHE Y:6
BINDING SITE FOR RESIDUE SO4 A 401
48
FC3
SOFTWARE
ARG B:111 , HIS Z:5 , PHE Z:6
BINDING SITE FOR RESIDUE SO4 Z 402
49
FC4
SOFTWARE
ASP A:114 , TYR A:116 , TYR C:116 , LYS C:117 , TYR C:131 , LYS C:154 , GLN C:157
BINDING SITE FOR RESIDUE CIT C 403
50
FC5
SOFTWARE
ASP B:114 , TYR B:116 , TRP B:156 , TYR D:116 , LYS D:117 , TYR D:131 , LYS D:154 , GLN D:157
BINDING SITE FOR RESIDUE CIT D 404
[
close Site info
]
SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_020091 (K59R, chain A/B/C/D, )
2: VAR_020092 (S76N, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020091
K
84
R
FCERA_HUMAN
Polymorphism
2298804
A/B/C/D
K
59
R
2
UniProt
VAR_020092
S
101
N
FCERA_HUMAN
Polymorphism
2298805
A/B/C/D
S
76
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(2, 8)
Info
All Exons
Exon 1.4a (A:4-86 (gaps) | B:4-86 (gaps) | C:...)
Exon 1.5 (A:86-171 | B:86-171 | C:86-171 | D...)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3/1.4a
2: Boundary 1.4a/1.5
3: Boundary 1.5/1.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000368115
1
ENSE00001277214
chr1:
159259504-159259543
40
FCERA_HUMAN
-
0
0
-
-
1.2a
ENST00000368115
2a
ENSE00001277230
chr1:
159272096-159272209
114
FCERA_HUMAN
1-19
19
0
-
-
1.3
ENST00000368115
3
ENSE00001067917
chr1:
159272644-159272664
21
FCERA_HUMAN
19-26
8
0
-
-
1.4a
ENST00000368115
4a
ENSE00001067919
chr1:
159273718-159273972
255
FCERA_HUMAN
26-111
86
4
A:4-86 (gaps)
B:4-86 (gaps)
C:4-86 (gaps)
D:4-86 (gaps)
83
83
83
83
1.5
ENST00000368115
5
ENSE00001277186
chr1:
159275778-159276035
258
FCERA_HUMAN
111-197
87
4
A:86-171
B:86-171
C:86-171
D:86-171
86
86
86
86
1.6b
ENST00000368115
6b
ENSE00001446352
chr1:
159277538-159278014
477
FCERA_HUMAN
197-257
61
0
-
-
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1rpqa1 (A:4-85)
1b: SCOP_d1rpqa2 (A:86-171)
1c: SCOP_d1rpqb1 (B:4-85)
1d: SCOP_d1rpqb2 (B:86-171)
1e: SCOP_d1rpqc1 (C:4-85)
1f: SCOP_d1rpqc2 (C:86-171)
1g: SCOP_d1rpqd1 (D:4-85)
1h: SCOP_d1rpqd2 (D:86-171)
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)
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)
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)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
IgE high affinity receptor alpha subunit
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1rpqa1
A:4-85
1b
d1rpqa2
A:86-171
1c
d1rpqb1
B:4-85
1d
d1rpqb2
B:86-171
1e
d1rpqc1
C:4-85
1f
d1rpqc2
C:86-171
1g
d1rpqd1
D:4-85
1h
d1rpqd2
D:86-171
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1rpqD01 (D:4-84)
1b: CATH_1rpqC01 (C:4-84)
1c: CATH_1rpqA01 (A:4-84)
1d: CATH_1rpqB01 (B:4-84)
1e: CATH_1rpqA02 (A:85-171)
1f: CATH_1rpqB02 (B:85-171)
1g: CATH_1rpqC02 (C:85-171)
1h: CATH_1rpqD02 (D:85-171)
View:
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Classes
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1rpqD01
D:4-84
1b
1rpqC01
C:4-84
1c
1rpqA01
A:4-84
1d
1rpqB01
B:4-84
1e
1rpqA02
A:85-171
1f
1rpqB02
B:85-171
1g
1rpqC02
C:85-171
1h
1rpqD02
D:85-171
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Ig_2_1rpqD01 (D:87-169)
1b: PFAM_Ig_2_1rpqD02 (D:87-169)
1c: PFAM_Ig_2_1rpqD03 (D:87-169)
1d: PFAM_Ig_2_1rpqD04 (D:87-169)
1e: PFAM_Ig_2_1rpqD05 (D:87-169)
1f: PFAM_Ig_2_1rpqD06 (D:87-169)
1g: PFAM_Ig_2_1rpqD07 (D:87-169)
1h: PFAM_Ig_2_1rpqD08 (D:87-169)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
1a
Ig_2-1rpqD01
D:87-169
1b
Ig_2-1rpqD02
D:87-169
1c
Ig_2-1rpqD03
D:87-169
1d
Ig_2-1rpqD04
D:87-169
1e
Ig_2-1rpqD05
D:87-169
1f
Ig_2-1rpqD06
D:87-169
1g
Ig_2-1rpqD07
D:87-169
1h
Ig_2-1rpqD08
D:87-169
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (39 KB)
Header - Biol.Unit 1
Biol.Unit 2 (38 KB)
Header - Biol.Unit 2
Biol.Unit 3 (39 KB)
Header - Biol.Unit 3
Biol.Unit 4 (39 KB)
Header - Biol.Unit 4
Biol.Unit 5 (72 KB)
Header - Biol.Unit 5
Biol.Unit 6 (72 KB)
Header - Biol.Unit 6
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