PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1ROT
Asym. Unit
Info
Asym.Unit (35 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF FKBP59-I, THE N-TERMINAL DOMAIN OF A 59 KDA FK506-BINDING PROTEIN, NMR, MINIMIZED AVERAGE STRUCTURE
Authors
:
C. T. Craescu, N. Rouviere, A. Popescu, E. Cerpolini, M. -C. Lebeau, E. - E. Baulieu, J. Mispelter
Date
:
14 Jun 96 (Deposition) - 07 Dec 96 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Rotamase (Isomerase), Domain I (N-Term) Of A 59 Kda, Fk506- Binding Protein, Peptidyl Prolyl Cis-Trans Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. T. Craescu, N. Rouviere, A. Popescu, E. Cerpolini, M. C. Lebeau, E. E. Baulieu, J. Mispelter
Three-Dimensional Structure Of The Immunophilin-Like Domain Of Fkbp59 In Solution.
Biochemistry V. 35 11045 1996
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FKBP_PPIASE (A:49-137|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FKBP_PPIASE
PS50059
FKBP-type peptidyl-prolyl cis-trans isomerase domain profile.
FKBP4_RABIT
50-138
167-253
1
A:49-137
-
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.1 (A:21-34)
Exon 1.2 (A:35-83)
Exon 1.3 (A:83-130)
Exon 1.4 (A:131-138)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSOCUT00000014603
1
ENSOCUE00000170086
chr8:
29030189-29030296
108
FKBP4_RABIT
1-35
35
1
A:21-34
14
1.2
ENSOCUT00000014603
2
ENSOCUE00000170089
chr8:
29032039-29032183
145
FKBP4_RABIT
36-84
49
1
A:35-83
49
1.3
ENSOCUT00000014603
3
ENSOCUE00000170093
chr8:
29032563-29032705
143
FKBP4_RABIT
84-131
48
1
A:83-130
48
1.4
ENSOCUT00000014603
4
ENSOCUE00000170096
chr8:
29033423-29033544
122
FKBP4_RABIT
132-172
41
1
A:131-138
8
1.5
ENSOCUT00000014603
5
ENSOCUE00000170100
chr8:
29033809-29033970
162
FKBP4_RABIT
172-226
55
0
-
-
1.6
ENSOCUT00000014603
6
ENSOCUE00000170104
chr8:
29034463-29034553
91
FKBP4_RABIT
226-256
31
0
-
-
1.7
ENSOCUT00000014603
7
ENSOCUE00000170110
chr8:
29034640-29034723
84
FKBP4_RABIT
257-284
28
0
-
-
1.8
ENSOCUT00000014603
8
ENSOCUE00000170116
chr8:
29034922-29035107
186
FKBP4_RABIT
285-346
62
0
-
-
1.9
ENSOCUT00000014603
9
ENSOCUE00000170124
chr8:
29035580-29035819
240
FKBP4_RABIT
347-426
80
0
-
-
1.10
ENSOCUT00000014603
10
ENSOCUE00000170130
chr8:
29036791-29037576
786
FKBP4_RABIT
427-460
34
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1rota_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FKBP-like
(309)
Superfamily
:
FKBP-like
(198)
Family
:
FKBP immunophilin/proline isomerase
(153)
Protein domain
:
FKBP59-I, N-terminal domain
(2)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(2)
1a
d1rota_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1rotA00 (A:21-138)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Chitinase A; domain 3
(225)
Homologous Superfamily
:
[code=3.10.50.40, no name defined]
(98)
Rabbit (Oryctolagus cuniculus)
(2)
1a
1rotA00
A:21-138
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_FKBP_C_1rotA01 (A:42-134)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: FKBP_C]
(58)
Family
:
FKBP_C
(58)
Oryctolagus cuniculus (Rabbit)
(2)
1a
FKBP_C-1rotA01
A:42-134
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (35 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1ROT
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help