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1RO9
Biol. Unit 2
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Asym.Unit (122 KB)
Biol.Unit 1 (61 KB)
Biol.Unit 2 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF THE CATALYTIC DOMAIN OF PHOSPHODIESTERASE 4B2B COMPLEXED WITH 8-BR-AMP
Authors
:
R. X. Xu, W. J. Rocque, M. H. Lambert, D. E. Vanderwall, R. T. Nolte
Date
:
01 Dec 03 (Deposition) - 07 Dec 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.13
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pde, 8-Br-Amp, Hydrolase
(Keyword Search:
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Reference
:
R. X. Xu, W. J. Rocque, M. H. Lambert, D. E. Vanderwall, M. A. Luther, R. T. Nolte
Crystal Structures Of The Catalytic Domain Of Phosphodiesterase 4B Complexed With Amp, 8-Br-Amp, And Rolipram.
J. Mol. Biol. V. 337 355 2004
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE (8BRa)
1b: 8-BROMO-ADENOSINE-5'-MONOPHOSPHATE (8BRb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
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No.
Name
Count
Type
Full Name
1
8BR
1
Ligand/Ion
8-BROMO-ADENOSINE-5'-MONOPHOSPHATE
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
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All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
HIS B:238 , HIS B:274 , ASP B:275 , ASP B:392 , 8BR B:531
BINDING SITE FOR RESIDUE ZN B 529
2
AC4
SOFTWARE
ASP B:275 , 8BR B:531 , HOH B:533 , HOH B:545 , HOH B:550
BINDING SITE FOR RESIDUE ZN B 530
3
AC6
SOFTWARE
TYR B:233 , HIS B:234 , HIS B:238 , MET B:347 , ASP B:392 , ASN B:395 , TYR B:403 , ILE B:410 , PHE B:414 , GLN B:443 , PHE B:446 , ZN B:529 , ZN B:530 , HOH B:588
BINDING SITE FOR RESIDUE 8BR B 531
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
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1: PDEASE_I (B:274-285)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDEASE_I
PS00126
3'5'-cyclic nucleotide phosphodiesterases signature.
PDE4B_HUMAN
446-457
1
-
B:274-285
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Exons
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SCOP Domains
(1, 2)
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All SCOP Domains
1a: SCOP_d1ro9a_ (A:)
1b: SCOP_d1ro9b_ (B:)
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Class
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All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
PDEase
(118)
Protein domain
:
Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b
(28)
Human (Homo sapiens) [TaxId: 9606]
(28)
1a
d1ro9a_
A:
1b
d1ro9b_
B:
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CATH Domains
(1, 2)
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all CATH domains
1a: CATH_1ro9B00 (B:152-488)
1b: CATH_1ro9A00 (A:152-489)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b
(66)
Homologous Superfamily
:
Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b
(66)
Human (Homo sapiens)
(64)
1a
1ro9B00
B:152-488
1b
1ro9A00
A:152-489
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDEase_I_1ro9B01 (B:233-477)
1b: PFAM_PDEase_I_1ro9B02 (B:233-477)
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Clan
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HD_PDEase
(93)
Family
:
PDEase_I
(77)
Homo sapiens (Human)
(71)
1a
PDEase_I-1ro9B01
B:233-477
1b
PDEase_I-1ro9B02
B:233-477
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Chain B
Asymmetric Unit 1
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Asym.Unit (122 KB)
Header - Asym.Unit
Biol.Unit 1 (61 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
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