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1RM8
Asym. Unit
Info
Asym.Unit (37 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF MMP-16/MT3-MMP: CHARACTERIZATION OF MT-MMP SPECIFIC FEATURES
Authors
:
R. Lang, M. Braun, N. E. Sounni, A. Noel, F. Frankenne, J. -M. Foidart, W. K. Maskos
Date
:
27 Nov 03 (Deposition) - 09 Mar 04 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mmp-16, Mt3-Mmp, Mt-Mmp, Membrane Type - Matrix Metalloproteinase, Batimastat, Hydroxamate Inhibitor, Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Lang, M. Braun, N. E. Sounni, A. Noel, F. Frankenne, J. M. Foidart, W. Bode, K. Maskos
Crystal Structure Of The Catalytic Domain Of Mmp-16/Mt3-Mmp Characterization Of Mt-Mmp Specific Features.
J. Mol. Biol. V. 336 213 2004
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-... (BATa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BAT
1
Ligand/Ion
4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE
2
CA
2
Ligand/Ion
CALCIUM ION
3
ZN
2
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:246 , HIS A:250 , HIS A:256 , BAT A:800
BINDING SITE FOR RESIDUE ZN A 500
2
AC2
SOFTWARE
HIS A:193 , ASP A:195 , HIS A:208 , HIS A:221
BINDING SITE FOR RESIDUE ZN A 501
3
AC3
SOFTWARE
ASP A:200 , GLY A:201 , GLY A:203 , PHE A:205 , ASP A:223 , GLU A:226
BINDING SITE FOR RESIDUE CA A 502
4
AC4
SOFTWARE
ASP A:183 , GLY A:215 , ILE A:216 , GLY A:217 , ASP A:219 , HOH A:1076
BINDING SITE FOR RESIDUE CA A 504
5
AC5
SOFTWARE
GLY A:194 , GLY A:204 , PHE A:205 , LEU A:206 , ALA A:207 , HIS A:246 , GLU A:247 , HIS A:250 , HIS A:256 , PRO A:260 , PRO A:266 , PHE A:267 , TYR A:268 , ZN A:500 , HOH A:1000 , HOH A:1029
BINDING SITE FOR RESIDUE BAT A 800
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:243-252)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP16_HUMAN
243-252
1
A:243-252
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Exons
(4, 4)
Info
All Exons
Exon 1.4a (A:124-135)
Exon 1.5b (A:135-237)
Exon 1.6 (A:237-291)
Exon 1.7 (A:291-292)
View:
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All Exon Boundaries
1: Boundary 1.3/1.4a
2: Boundary 1.4a/1.5b
3: Boundary 1.5b/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000286614
2a
ENSE00001399203
chr8:
89339717-89339304
414
MMP16_HUMAN
1-44
44
0
-
-
1.3
ENST00000286614
3
ENSE00001024539
chr8:
89209535-89209387
149
MMP16_HUMAN
45-94
50
0
-
-
1.4a
ENST00000286614
4a
ENSE00001024546
chr8:
89198827-89198705
123
MMP16_HUMAN
94-135
42
1
A:124-135
12
1.5b
ENST00000286614
5b
ENSE00001024542
chr8:
89180202-89179898
305
MMP16_HUMAN
135-237
103
1
A:135-237
103
1.6
ENST00000286614
6
ENSE00001793434
chr8:
89131090-89130929
162
MMP16_HUMAN
237-291
55
1
A:237-291
55
1.7
ENST00000286614
7
ENSE00001088393
chr8:
89128947-89128736
212
MMP16_HUMAN
291-361
71
1
A:291-292
2
1.8
ENST00000286614
8
ENSE00001088407
chr8:
89086971-89086833
139
MMP16_HUMAN
362-408
47
0
-
-
1.10
ENST00000286614
10
ENSE00001088408
chr8:
89068506-89068356
151
MMP16_HUMAN
408-458
51
0
-
-
1.11
ENST00000286614
11
ENSE00001088402
chr8:
89059012-89058897
116
MMP16_HUMAN
458-497
40
0
-
-
1.12
ENST00000286614
12
ENSE00001260017
chr8:
89054023-89044237
9787
MMP16_HUMAN
497-607
111
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1rm8a_ (A:)
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(
)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Matrix metalloproteinase-16 (MMP-16)
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1rm8a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1rm8A00 (A:124-292)
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Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
1rm8A00
A:124-292
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_1rm8A01 (A:126-291)
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Clans
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)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-1rm8A01
A:126-291
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Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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