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1RJX
Asym. Unit
Info
Asym.Unit (50 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (995 KB)
Biol.Unit 3 (250 KB)
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(1)
Title
:
HUMAN PLASMINOGEN CATALYTIC DOMAIN, K698M MUTANT
Authors
:
S. Terzyan, N. Wakeham, P. Zhai, K. Rodgers, X. C. Zhang
Date
:
20 Nov 03 (Deposition) - 02 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : B
Biol. Unit 1: B (1x)
Biol. Unit 2: B (24x)
Biol. Unit 3: B (6x)
Keywords
:
Microplasminogen, Plasminogen Activation, Streptokinase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Terzyan, N. Wakeham, P. Zhai, K. Rodgers, X. C. Zhang
Characterization Of Lys-698 To Met Substitution In Human Plasminogen Catalytic Domain
Proteins V. 56 277 2004
[
close entry info
]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:108 , HOH B:115 , HOH B:154 , PRO B:595 , ARG B:789 , ASN B:790
BINDING SITE FOR RESIDUE SO4 B 201
2
AC2
SOFTWARE
HOH B:103 , HIS B:629 , ARG B:644 , GLN B:721 , SER B:722
BINDING SITE FOR RESIDUE SO4 B 202
3
AC3
SOFTWARE
HOH B:134 , SER B:636 , ARG B:637 , LYS B:651
BINDING SITE FOR RESIDUE SO4 B 203
4
AC4
SOFTWARE
ARG B:644 , LYS B:661
BINDING SITE FOR RESIDUE SO4 B 204
5
AC5
SOFTWARE
HOH B:112 , SO4 B:207 , HIS B:571 , GLU B:627 , LYS B:661 , ARG B:719
BINDING SITE FOR RESIDUE SO4 B 205
6
AC6
SOFTWARE
HOH B:147 , ARG B:712 , TYR B:713 , GLU B:714
BINDING SITE FOR RESIDUE SO4 B 206
7
AC7
SOFTWARE
HOH B:10 , HOH B:105 , SO4 B:205 , PRO B:570 , ARG B:719
BINDING SITE FOR RESIDUE SO4 B 207
8
AC8
SOFTWARE
HOH B:55 , ARG B:677 , PRO B:703 , HIS B:729 , LEU B:730 , ALA B:731
BINDING SITE FOR RESIDUE SO4 B 208
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_006628 (S572P, chain B, )
2: VAR_006629 (A601T, chain B, )
3: VAR_031213 (V657D, chain B, )
4: VAR_006630 (G732R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_006628
S
591
P
PLMN_HUMAN
Disease (PLGD)
---
B
S
572
P
2
UniProt
VAR_006629
A
620
T
PLMN_HUMAN
Disease (PLGD)
121918027
B
A
601
T
3
UniProt
VAR_031213
V
676
D
PLMN_HUMAN
Polymorphism
17857492
B
V
657
D
4
UniProt
VAR_006630
G
751
R
PLMN_HUMAN
Disease (PLGD)
---
B
G
732
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TRYPSIN_DOM (B:562-789)
2: TRYPSIN_HIS (B:599-604)
3: TRYPSIN_SER (B:735-746)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
PLMN_HUMAN
581-808
1
B:562-789
2
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
PLMN_HUMAN
618-623
1
B:599-604
3
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
PLMN_HUMAN
754-765
1
B:735-746
[
close PROSITE info
]
Exons
(6, 6)
Info
All Exons
Exon 1.14 (B:545-582)
Exon 1.15b (B:582-607)
Exon 1.16 (B:607-654)
Exon 1.17b (B:654-687)
Exon 1.18b (B:692-738)
Exon 1.19b (B:739-791)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.13/1.14
2: Boundary 1.14/1.15b
3: Boundary 1.15b/1.16
4: Boundary 1.16/1.17b
5: Boundary 1.17b/1.18b
6: Boundary 1.18b/1.19b
7: Boundary 1.19b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308192
1b
ENSE00001900502
chr6:
161123274-161123385
112
PLMN_HUMAN
1-17
17
0
-
-
1.2d
ENST00000308192
2d
ENSE00002186994
chr6:
161127439-161127574
136
PLMN_HUMAN
17-62
46
0
-
-
1.3a
ENST00000308192
3a
ENSE00002162767
chr6:
161128732-161128838
107
PLMN_HUMAN
62-98
37
0
-
-
1.4a
ENST00000308192
4a
ENSE00002147931
chr6:
161132109-161132223
115
PLMN_HUMAN
98-136
39
0
-
-
1.5b
ENST00000308192
5b
ENSE00002160428
chr6:
161134018-161134157
140
PLMN_HUMAN
136-183
48
0
-
-
1.6
ENST00000308192
6
ENSE00002153394
chr6:
161135826-161135946
121
PLMN_HUMAN
183-223
41
0
-
-
1.7
ENST00000308192
7
ENSE00002185478
chr6:
161137677-161137795
119
PLMN_HUMAN
223-263
41
0
-
-
1.8
ENST00000308192
8
ENSE00002162125
chr6:
161139326-161139488
163
PLMN_HUMAN
263-317
55
0
-
-
1.9
ENST00000308192
9
ENSE00002174772
chr6:
161139725-161139870
146
PLMN_HUMAN
317-366
50
0
-
-
1.10
ENST00000308192
10
ENSE00002171287
chr6:
161143440-161143599
160
PLMN_HUMAN
366-419
54
0
-
-
1.11c
ENST00000308192
11c
ENSE00002163078
chr6:
161152083-161152264
182
PLMN_HUMAN
419-480
62
0
-
-
1.12b
ENST00000308192
12b
ENSE00002160674
chr6:
161152777-161152925
149
PLMN_HUMAN
480-529
50
0
-
-
1.13
ENST00000308192
13
ENSE00002175196
chr6:
161155027-161155120
94
PLMN_HUMAN
530-561
32
0
-
-
1.14
ENST00000308192
14
ENSE00002152595
chr6:
161157919-161158039
121
PLMN_HUMAN
561-601
41
1
B:545-582
38
1.15b
ENST00000308192
15b
ENSE00002177616
chr6:
161159570-161159644
75
PLMN_HUMAN
601-626
26
1
B:582-607
26
1.16
ENST00000308192
16
ENSE00002172545
chr6:
161160100-161160240
141
PLMN_HUMAN
626-673
48
1
B:607-654
48
1.17b
ENST00000308192
17b
ENSE00002178747
chr6:
161162343-161162449
107
PLMN_HUMAN
673-709
37
1
B:654-687
34
1.18b
ENST00000308192
18b
ENSE00002181703
chr6:
161173147-161173292
146
PLMN_HUMAN
709-757
49
1
B:692-738
47
1.19b
ENST00000308192
19b
ENSE00001864790
chr6:
161173932-161174338
407
PLMN_HUMAN
758-810
53
1
B:739-791
53
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1rjxb_ (B:)
View:
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Classes
(
)
(
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Folds
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)
Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Trypsin-like serine proteases
(1752)
Superfamily
:
Trypsin-like serine proteases
(1752)
Family
:
Eukaryotic proteases
(1343)
Protein domain
:
Plasmin(ogen), catalytic domain
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d1rjxb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1rjxB02 (B:574-664,B:779-790)
1b: CATH_1rjxB01 (B:562-573,B:665-778)
View:
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(
)
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(
)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Thrombin, subunit H
(1535)
Homologous Superfamily
:
Trypsin-like serine proteases
(1488)
Human (Homo sapiens)
(615)
1a
1rjxB02
B:574-664,B:779-790
1b
1rjxB01
B:562-573,B:665-778
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Trypsin_1rjxB01 (B:562-784)
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Clans
(
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-1rjxB01
B:562-784
[
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]
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