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1RJV
Asym. Unit
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Asym.Unit (605 KB)
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Models
(19 )
Title
:
SOLUTION STRUCTURE OF HUMAN ALPHA-PARVALBUMIN REFINED WITH A PARAMAGNETISM-BASED STRATEGY
Authors
:
I. Baig, I. Bertini, C. Del Bianco, Y. K. Gupta, Y. M. Lee, C. Luchinat, A. Quattrone, Structural Proteomics In Europe (Spine)
Date
:
20 Nov 03 (Deposition) - 25 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (19 x)
Keywords
:
Calcium, Parvalbumin, Ef-Hand, Nmr, Lanthanide, Structural Proteomics In Europe, Spine, Structural Genomics, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Baig, I. Bertini, C. Del Bianco, Y. K. Gupta, Y. M. Lee, C. Luchinat, A. Quattrone
Paramagnetism-Based Refinement Strategy For The Solution Structure Of Human Alpha-Parvalbumin.
Biochemistry V. 43 5562 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
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Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:91 , ASP A:93 , ASP A:95 , LYS A:97 , GLU A:102
BINDING SITE FOR RESIDUE CA A 111
2
AC2
SOFTWARE
ASP A:52 , ASP A:54 , SER A:56 , PHE A:58 , GLU A:60 , GLU A:63
BINDING SITE FOR RESIDUE CA A 112
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:39-74|A:78-110)
2: EF_HAND_1 (A:52-64|A:91-103)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
PRVA_HUMAN
39-74
78-110
2
A:39-74
A:78-110
2
EF_HAND_1
PS00018
EF-hand calcium-binding domain.
PRVA_HUMAN
52-64
91-103
2
A:52-64
A:91-103
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Exons
(4, 4)
Info
All Exons
Exon 1.3b (A:1-21)
Exon 1.5 (A:21-65)
Exon 1.6a (A:65-102)
Exon 1.8c (A:102-110)
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All Exon Boundaries
1: Boundary 1.1a/1.3b
2: Boundary 1.3b/1.5
3: Boundary 1.5/1.6a
4: Boundary 1.6a/1.8c
5: Boundary 1.8c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000216200
1a
ENSE00001830866
chr22:
37215523-37215475
49
PRVA_HUMAN
-
0
0
-
-
1.3b
ENST00000216200
3b
ENSE00000880082
chr22:
37213056-37212989
68
PRVA_HUMAN
1-21
21
1
A:1-21
21
1.5
ENST00000216200
5
ENSE00001750824
chr22:
37211279-37211147
133
PRVA_HUMAN
21-65
45
1
A:21-65
45
1.6a
ENST00000216200
6a
ENSE00002160254
chr22:
37209799-37209690
110
PRVA_HUMAN
65-102
38
1
A:65-102
38
1.8c
ENST00000216200
8c
ENSE00001044920
chr22:
37196962-37196728
235
PRVA_HUMAN
102-110
9
1
A:102-110
9
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1rjva_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
Parvalbumin
(36)
Protein domain
:
Parvalbumin
(30)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1rjva_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1rjvA00 (A:1-110)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1rjvA00
A:1-110
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_EF_hand_5_1rjvA01 (A:4-107)
2a: PFAM_EF_hand_6_1rjvA02 (A:67-110)
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)
Clan
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EF_hand
(270)
Family
:
EF_hand_5
(126)
Homo sapiens (Human)
(31)
1a
EF_hand_5-1rjvA01
A:4-107
Family
:
EF_hand_6
(75)
Homo sapiens (Human)
(34)
2a
EF_hand_6-1rjvA02
A:67-110
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Chain A
Asymmetric Unit 1
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