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1RJO
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (220 KB)
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(1)
Title
:
AGAO + XE
Authors
:
J. M. Guss, D. M. Trambaiolo, A. P. Duff
Date
:
19 Nov 03 (Deposition) - 07 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Cao, Cuao, Copper-Containing, Amine Oxidase, Oxygen Binding Site, Dioxygen Binding Site, Xenon, Tpq, Quinone, Trihydroxyphenylalanine Quinone, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. P. Duff, D. M. Trambaiolo, A. E. Cohen, P. J. Ellis, G. A. Juda, E. M. Shepard, D. B. Langley, D. M. Dooley, H. C. Freeman, J. M. Guss
Using Xenon As A Probe For Dioxygen-Binding Sites In Copper Amine Oxidases
J. Mol. Biol. V. 344 599 2004
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Hetero Components
(6, 14)
Info
All Hetero Components
1a: COPPER (II) ION (CUa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SODIUM ION (NAa)
4a: SULFATE ION (SO4a)
5a: 5-(2-CARBOXY-2-AMINOETHYL)-2-HYDRO... (TPQa)
6a: XENON (XEa)
6b: XENON (XEb)
6c: XENON (XEc)
6d: XENON (XEd)
6e: XENON (XEe)
6f: XENON (XEf)
6g: XENON (XEg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CU
1
Ligand/Ion
COPPER (II) ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
NA
1
Ligand/Ion
SODIUM ION
4
SO4
1
Ligand/Ion
SULFATE ION
5
TPQ
1
Mod. Amino Acid
5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
6
XE
7
Ligand/Ion
XENON
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , HIS A:433 , HIS A:592 , HOH A:1745
BINDING SITE FOR RESIDUE CU A 701
02
AC2
SOFTWARE
ASP A:440 , MET A:441 , ASP A:581 , ILE A:582 , HOH A:1219
BINDING SITE FOR RESIDUE NA A 703
03
AC3
SOFTWARE
ASP A:316 , CYS A:317 , LEU A:318 , HIS A:345 , GLY A:350 , ARG A:367 , TYR A:387 , HOH A:1234 , HOH A:1428 , HOH A:1518 , HOH A:1606
BINDING SITE FOR RESIDUE SO4 A 1101
04
AC4
SOFTWARE
ILE A:238 , LEU A:245 , LEU A:390
BINDING SITE FOR RESIDUE XE A 901
05
AC5
SOFTWARE
ALA A:402 , LEU A:590
BINDING SITE FOR RESIDUE XE A 902
06
AC6
SOFTWARE
ARG A:71
BINDING SITE FOR RESIDUE XE A 903
07
AC7
SOFTWARE
ILE A:373 , TRP A:388 , LEU A:390
BINDING SITE FOR RESIDUE XE A 904
08
AC8
SOFTWARE
VAL A:23 , GLN A:24 , ILE A:39 , LEU A:42 , GLY A:333
BINDING SITE FOR RESIDUE XE A 905
09
AC9
SOFTWARE
LEU A:42 , VAL A:327
BINDING SITE FOR RESIDUE XE A 909
10
BC1
SOFTWARE
TRP A:359 , HOH A:1746
BINDING SITE FOR RESIDUE XE A 910
11
BC2
SOFTWARE
ARG A:532 , ARG A:533 , THR A:554 , PHE A:557 , HIS A:561 , SER A:562 , GLY A:563 , GLY A:564 , ALA A:565 , HOH A:1256
BINDING SITE FOR RESIDUE GOL A 1201
12
BC3
SOFTWARE
ASN A:126 , ASP A:161 , VAL A:197 , ALA A:199 , HOH A:1475 , HOH A:1493 , HOH A:1563
BINDING SITE FOR RESIDUE GOL A 1202
13
BC4
SOFTWARE
ASP A:444 , GLY A:445 , PHE A:446 , THR A:447 , ASN A:499
BINDING SITE FOR RESIDUE GOL A 1203
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: COPPER_AMINE_OXID_1 (A:371-384)
2: COPPER_AMINE_OXID_2 (A:587-600)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COPPER_AMINE_OXID_1
PS01164
Copper amine oxidase topaquinone signature.
PAOX_ARTGO
371-384
1
A:371-384
2
COPPER_AMINE_OXID_2
PS01165
Copper amine oxidase copper-binding site signature.
PAOX_ARTGO
587-600
1
A:587-600
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1rjoa1 (A:212-628)
2a: SCOP_d1rjoa2 (A:9-96)
2b: SCOP_d1rjoa3 (A:97-211)
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Classes
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)
(
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Folds
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(
)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Supersandwich
(271)
Superfamily
:
Amine oxidase catalytic domain
(65)
Family
:
Amine oxidase catalytic domain
(65)
Protein domain
:
Copper amine oxidase, domain 3
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
1a
d1rjoa1
A:212-628
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Amine oxidase N-terminal region
(65)
Family
:
Amine oxidase N-terminal region
(65)
Protein domain
:
Copper amine oxidase, domains 1 and 2
(62)
Arthrobacter globiformis [TaxId: 1665]
(40)
2a
d1rjoa2
A:9-96
2b
d1rjoa3
A:97-211
[
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_1rjoA02 (A:102-203)
1b: CATH_1rjoA01 (A:9-95)
2a: CATH_1rjoA03 (A:204-627)
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)
Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Nuclear Transport Factor 2; Chain: A,
(517)
Homologous Superfamily
:
[code=3.10.450.40, no name defined]
(77)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
1a
1rjoA02
A:102-203
1b
1rjoA01
A:9-95
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Beta-galactosidase; Chain A, domain 5
(250)
Homologous Superfamily
:
Copper amine oxidase, Domain 3
(74)
Arthrobacter globiformis. Organism_taxid: 1665.
(34)
2a
1rjoA03
A:204-627
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (117 KB)
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