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1RJD
Asym. Unit
Info
Asym.Unit (184 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (62 KB)
Biol.Unit 3 (62 KB)
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(1)
Title
:
STRUCTURE OF PPM1, A LEUCINE CARBOXY METHYLTRANSFERASE INVOLVED IN THE REGULATION OF PROTEIN PHOSPHATASE 2A ACTIVITY
Authors
:
N. Leulliot, S. Quevillon-Cheruel, I. Sorel, I. Li De La Sierra- Gallay, B. Collinet, M. Graille, K. Blondeau, N. Bettache, A. Poupon, J. Janin, H. Van Tilbeurgh
Date
:
19 Nov 03 (Deposition) - 02 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Sam Dependent Methyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Leulliot, S. Quevillon-Cheruel, I. Sorel, I. Li De La Sierra-Gallay, B. Collinet, M. Graille, K. Blondeau, N. Bettache, A. Poupon, J. Janin, H. Van Tilbeurgh
Structure Of Protein Phosphatase Methyltransferase 1 (Ppm1), A Leucine Carboxyl Methyltransferase Involved In The Regulation Of Protein Phosphatase 2A Activity
J. Biol. Chem. V. 279 8351 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
1c: BETA-MERCAPTOETHANOL (BMEc)
1d: BETA-MERCAPTOETHANOL (BMEd)
1e: BETA-MERCAPTOETHANOL (BMEe)
1f: BETA-MERCAPTOETHANOL (BMEf)
2a: S-ADENOSYLMETHIONINE (SAMa)
2b: S-ADENOSYLMETHIONINE (SAMb)
2c: S-ADENOSYLMETHIONINE (SAMc)
3a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BME
6
Ligand/Ion
BETA-MERCAPTOETHANOL
2
SAM
3
Ligand/Ion
S-ADENOSYLMETHIONINE
3
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG C:192 , SER C:224 , HIS C:330 , HIS C:331 , HIS C:332 , HIS C:333 , HIS C:334
BINDING SITE FOR RESIDUE SO4 C 335
02
AC2
SOFTWARE
ILE A:5 , GLN A:6 , THR A:8 , ASP A:9 , ALA A:12 , ARG A:81 , GLY A:105 , CYS A:106 , GLY A:107 , ASP A:128 , TYR A:129 , CYS A:174 , ASP A:175 , LEU A:176 , ASN A:177 , GLU A:201 , CYS A:202 , LEU A:203 , HOH A:810 , HOH A:811 , HOH A:838 , HOH A:864 , HOH A:913 , HOH A:1010
BINDING SITE FOR RESIDUE SAM A 801
03
AC3
SOFTWARE
ILE B:5 , GLN B:6 , THR B:8 , ASP B:9 , ALA B:12 , ARG B:81 , GLY B:105 , CYS B:106 , GLY B:107 , ASP B:128 , TYR B:129 , CYS B:174 , ASP B:175 , LEU B:176 , ASN B:177 , GLU B:201 , CYS B:202 , LEU B:203 , TYR B:206 , HOH B:809 , HOH B:811 , HOH B:823 , HOH B:847 , HOH B:863 , HOH B:877
BINDING SITE FOR RESIDUE SAM B 802
04
AC4
SOFTWARE
ILE C:5 , GLN C:6 , THR C:8 , ALA C:12 , ARG C:81 , GLY C:105 , CYS C:106 , GLY C:107 , ASP C:128 , TYR C:129 , CYS C:174 , ASP C:175 , LEU C:176 , ASN C:177 , GLU C:201 , CYS C:202 , LEU C:203 , TYR C:206 , HOH C:824 , HOH C:826 , HOH C:846 , HOH C:869 , HOH C:912 , HOH C:949
BINDING SITE FOR RESIDUE SAM C 803
05
AC5
SOFTWARE
CYS A:202 , TYR A:206 , PRO A:233 , MET A:259
BINDING SITE FOR RESIDUE BME A 804
06
AC6
SOFTWARE
CYS B:202 , TYR B:206 , PRO B:233 , HOH B:978
BINDING SITE FOR RESIDUE BME B 805
07
AC7
SOFTWARE
CYS C:202 , TYR C:206 , PRO C:233 , MET C:259
BINDING SITE FOR RESIDUE BME C 806
08
AC8
SOFTWARE
SER A:14 , CYS A:15 , ALA A:66 , SER A:70 , HOH A:960
BINDING SITE FOR RESIDUE BME A 807
09
AC9
SOFTWARE
CYS B:15 , ALA B:66 , SER B:70 , MET B:74
BINDING SITE FOR RESIDUE BME B 808
10
BC1
SOFTWARE
CYS C:15 , ALA C:66 , SER C:70 , MET C:74 , HOH C:1026
BINDING SITE FOR RESIDUE BME C 809
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(1, 3)
Info
All Exons
Exon 1.1 (A:2-328 | B:2-328 | C:2-328)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YDR435C
1
YDR435C.1
IV:1333962-1332976
987
LCMT1_YEAST
1-328
328
3
A:2-328
B:2-328
C:2-328
327
327
327
[
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1rjda_ (A:)
1b: SCOP_d1rjdb_ (B:)
1c: SCOP_d1rjdc_ (C:)
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)
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)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
Leucine carboxy methyltransferase Ppm1
(6)
Protein domain
:
Leucine carboxy methyltransferase Ppm1
(6)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(6)
1a
d1rjda_
A:
1b
d1rjdb_
B:
1c
d1rjdc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1rjdA00 (A:2-329)
1b: CATH_1rjdB00 (B:2-330)
1c: CATH_1rjdC00 (C:2-334)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Baker's yeast (Saccharomyces cerevisiae)
(8)
1a
1rjdA00
A:2-329
1b
1rjdB00
B:2-330
1c
1rjdC00
C:2-334
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_LCM_1rjdC01 (C:24-220)
1b: PFAM_LCM_1rjdC02 (C:24-220)
1c: PFAM_LCM_1rjdC03 (C:24-220)
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Clan
:
NADP_Rossmann
(1239)
Family
:
LCM
(10)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(6)
1a
LCM-1rjdC01
C:24-220
1b
LCM-1rjdC02
C:24-220
1c
LCM-1rjdC03
C:24-220
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Show PDB file:
Asym.Unit (184 KB)
Header - Asym.Unit
Biol.Unit 1 (63 KB)
Header - Biol.Unit 1
Biol.Unit 2 (62 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
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