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1RJ9
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (96 KB)
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(1)
Title
:
STRUCTURE OF THE HETERODIMER OF THE CONSERVED GTPASE DOMAINS OF THE SIGNAL RECOGNITION PARTICLE (FFH) AND ITS RECEPTOR (FTSY)
Authors
:
P. F. Egea, S. O. Shan, J. Napetschnig, D. F. Savage, P. Walter, R. M. Stro
Date
:
18 Nov 03 (Deposition) - 27 Jan 04 (Release) - 09 Jun 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Srp-Gtpase Domain, Heterodimer, Nucleotide Twinning, Protein-Protein Complex, Protein Transport
(Keyword Search:
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Reference
:
P. F. Egea, S. O. Shan, J. Napetschnig, D. F. Savage, P. Walter, R. M. Stroud
Substrate Twinning Activates The Signal Recognition Particle And Its Receptor
Nature V. 427 215 2004
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GCP
2
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:116 , GCP A:500 , HOH A:701 , HOH A:702 , HOH A:703
BINDING SITE FOR RESIDUE MG A 501
2
AC2
SOFTWARE
THR B:112 , GCP B:600 , HOH B:704 , HOH B:705 , HOH B:706
BINDING SITE FOR RESIDUE MG B 601
3
AC3
SOFTWARE
ASN A:111 , GLY A:112 , VAL A:113 , GLY A:114 , LYS A:115 , THR A:116 , THR A:117 , LYS A:121 , ASP A:139 , ARG A:142 , GLN A:148 , GLY A:194 , LYS A:256 , ASP A:258 , GLY A:281 , VAL A:282 , GLY A:283 , GLU A:284 , MG A:501 , HOH A:702 , HOH A:713 , HOH A:722 , HOH A:749 , GLN B:107 , ARG B:138 , GCP B:600 , HOH B:718
BINDING SITE FOR RESIDUE GCP A 500
4
AC4
SOFTWARE
ASN A:111 , ARG A:142 , LEU A:196 , GCP A:500 , GLN B:107 , GLY B:108 , SER B:109 , GLY B:110 , LYS B:111 , THR B:112 , THR B:113 , LYS B:117 , ASP B:135 , ARG B:138 , GLN B:144 , GLY B:190 , LYS B:246 , ASP B:248 , GLY B:271 , VAL B:272 , SER B:273 , GLU B:274 , MG B:601 , HOH B:705 , HOH B:707 , HOH B:718 , HOH B:719 , HOH B:727 , HOH B:760
BINDING SITE FOR RESIDUE GCP B 600
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: SRP54 (B:266-279,A:276-289)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRP54
PS00300
SRP54-type proteins GTP-binding domain signature.
SRP54_THEAQ
266-279
1
B:266-279
FTSY_THEAQ
276-289
1
A:276-289
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d1rj9a1 (A:27-95)
2a: SCOP_d1rj9b1 (B:14-88)
3a: SCOP_d1rj9a2 (A:96-303)
4a: SCOP_d1rj9b2 (B:89-295)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Four-helical up-and-down bundle
(308)
Superfamily
:
Domain of the SRP/SRP receptor G-proteins
(34)
Family
:
Domain of the SRP/SRP receptor G-proteins
(29)
Protein domain
:
Signal recognition particle receptor, FtsY
(7)
Thermus aquaticus [TaxId: 271]
(4)
1a
d1rj9a1
A:27-95
Protein domain
:
Signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
2a
d1rj9b1
B:14-88
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Nitrogenase iron protein-like
(152)
Protein domain
:
GTPase domain of the signal recognition particle receptor FtsY
(7)
Thermus aquaticus [TaxId: 271]
(4)
3a
d1rj9a2
A:96-303
Protein domain
:
GTPase domain of the signal sequence recognition protein Ffh
(21)
Thermus aquaticus [TaxId: 271]
(17)
4a
d1rj9b2
B:89-295
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1rj9B02 (B:91-281)
1b: CATH_1rj9A02 (A:96-291)
2a: CATH_1rj9B01 (B:14-90)
2b: CATH_1rj9A01 (A:27-95,A:292-303)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Thermus aquaticus. Organism_taxid: 271.
(14)
1a
1rj9B02
B:91-281
1b
1rj9A02
A:96-291
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.140, no name defined]
(15)
Thermus aquaticus. Organism_taxid: 271.
(6)
2a
1rj9B01
B:14-90
2b
1rj9A01
A:27-95,A:292-303
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_SRP54_1rj9A01 (A:102-303)
1b: PFAM_SRP54_1rj9B01 (B:98-293)
2a: PFAM_SRP54_N_1rj9A02 (A:27-77)
2b: PFAM_SRP54_N_1rj9B02 (B:14-82)
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Clan
:
P-loop_NTPase
(1112)
Family
:
SRP54
(20)
Thermus aquaticus
(12)
1a
SRP54-1rj9A01
A:102-303
1b
SRP54-1rj9B01
B:98-293
Clan
:
no clan defined [family: SRP54_N]
(20)
Family
:
SRP54_N
(20)
Thermus aquaticus
(12)
2a
SRP54_N-1rj9A02
A:27-77
2b
SRP54_N-1rj9B02
B:14-82
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