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1RJ4
Biol. Unit 2
Info
Asym.Unit (102 KB)
Biol.Unit 1 (27 KB)
Biol.Unit 2 (26 KB)
Biol.Unit 3 (26 KB)
Biol.Unit 4 (26 KB)
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(1)
Title
:
STRUCTURE OF A CELL WALL INVERTASE INHIBITOR FROM TOBACCO IN COMPLEX WITH CD2+
Authors
:
M. Hothorn, I. D'Angelo, J. A. Marquez, S. Greiner, K. Scheffzek
Date
:
18 Nov 03 (Deposition) - 03 Feb 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Four-Helix Bundle, Helical Hairpin, Cadmium Coordination, Bis-Tris Buffer, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Hothorn, I. D'Angelo, J. A. Marquez, S. Greiner, K. Scheffzek
The Invertase Inhibitor Nt-Cif From Tobacco: A Highly Thermostable Four-Helix Bundle With An Unusual N-Terminal Extension
J. Mol. Biol. V. 335 987 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
1b: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBb)
1c: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBc)
1d: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBd)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
2g: CADMIUM ION (CDg)
2h: CADMIUM ION (CDh)
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No.
Name
Count
Type
Full Name
1
BTB
1
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
CD
-1
Ligand/Ion
CADMIUM ION
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Sites
(5, 5)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC5 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
GLU B:113 , BTB B:157
BINDING SITE FOR RESIDUE CD B 150
2
AC4
SOFTWARE
HIS B:133 , ASP B:137 , HOH B:190 , HOH B:280 , HOH B:321 , HOH B:384
BINDING SITE FOR RESIDUE CD B 151
3
AC5
SOFTWARE
HIS A:133 , ASP A:137 , HOH A:334 , HOH B:333
BINDING SITE FOR RESIDUE CD A 152
4
BC1
SOFTWARE
ASP B:110 , GLU B:113 , TYR B:117 , CD B:150 , HOH B:177 , HOH B:287 , HOH B:389 , SER D:84 , GLU D:87 , ASP D:102 , ASP D:110 , BTB D:159 , HOH D:165 , HOH D:275
BINDING SITE FOR RESIDUE BTB B 157
5
BC3
SOFTWARE
SER B:84 , GLU B:87 , ASP B:110 , BTB B:157 , HOH B:160 , HOH B:235 , ASP D:110 , GLU D:113 , TYR D:117 , CD D:149 , HOH D:184 , HOH D:267
BINDING SITE FOR RESIDUE BTB D 159
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1rj4a_ (A:)
1b: SCOP_d1rj4b_ (B:)
1c: SCOP_d1rj4c_ (C:)
1d: SCOP_d1rj4d_ (D:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Bromodomain-like
(339)
Superfamily
:
Plant invertase/pectin methylesterase inhibitor
(12)
Family
:
Plant invertase/pectin methylesterase inhibitor
(11)
Protein domain
:
Invertase inhibitor
(2)
Tobacco (Nicotiana tabacum) [TaxId: 4097]
(2)
1a
d1rj4a_
A:
1b
d1rj4b_
B:
1c
d1rj4c_
C:
1d
d1rj4d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1rj4A00 (A:1-147)
1b: CATH_1rj4C00 (C:2-147)
1c: CATH_1rj4D00 (D:2-147)
1d: CATH_1rj4B00 (B:2-147)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Butyryl-CoA Dehydrogenase, subunit A; domain 3
(76)
Homologous Superfamily
:
Invertase/pectin methylesterase inhibitor family protein
(9)
Common tobacco (Nicotiana tabacum)
(7)
1a
1rj4A00
A:1-147
1b
1rj4C00
C:2-147
1c
1rj4D00
D:2-147
1d
1rj4B00
B:2-147
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PMEI_1rj4D01 (D:2-142)
1b: PFAM_PMEI_1rj4D02 (D:2-142)
1c: PFAM_PMEI_1rj4D03 (D:2-142)
1d: PFAM_PMEI_1rj4D04 (D:2-142)
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Clan
:
no clan defined [family: PMEI]
(6)
Family
:
PMEI
(6)
Nicotiana tabacum (Common tobacco)
(3)
1a
PMEI-1rj4D01
D:2-142
1b
PMEI-1rj4D02
D:2-142
1c
PMEI-1rj4D03
D:2-142
1d
PMEI-1rj4D04
D:2-142
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (102 KB)
Header - Asym.Unit
Biol.Unit 1 (27 KB)
Header - Biol.Unit 1
Biol.Unit 2 (26 KB)
Header - Biol.Unit 2
Biol.Unit 3 (26 KB)
Header - Biol.Unit 3
Biol.Unit 4 (26 KB)
Header - Biol.Unit 4
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