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1RIN
Biol. Unit 1
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Asym.Unit (81 KB)
Biol.Unit 1 (76 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (39 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF A PEA LECTIN-TRIMANNOSIDE COMPLEX AT 2.6 ANGSTROMS RESOLUTION
Authors
:
J. M. Rini, K. D. Hardman, H. Einspahr, F. L. Suddath, J. P. Carver
Date
:
27 Jan 93 (Deposition) - 31 Oct 93 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Lectin
(Keyword Search:
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Reference
:
J. M. Rini, K. D. Hardman, H. Einspahr, F. L. Suddath, J. P. Carver
X-Ray Crystal Structure Of A Pea Lectin-Trimannoside Comple At 2. 6 A Resolution.
J. Biol. Chem. V. 268 10126 1993
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA A:80 , ASP A:81 , GLY A:99 , PHE A:123 , ASN A:125 , GLY B:216 , ALA B:217 , GLU B:218
BINDING SITE FOR RESIDUE MAN A 250
2
AC2
SOFTWARE
ALA C:80 , ASP C:81 , GLY C:99 , PHE C:123 , ASN C:125 , GLY D:216 , ALA D:217 , GLU D:218
BINDING SITE FOR RESIDUE MAN C 250
3
AC3
SOFTWARE
GLU A:119 , ASP A:121 , ASP A:129 , HIS A:136 , HOH A:251 , HOH A:252
BINDING SITE FOR RESIDUE MN A 240
4
AC4
SOFTWARE
ASP A:121 , PHE A:123 , ASN A:125 , ASP A:129 , HOH A:253 , HOH A:254
BINDING SITE FOR RESIDUE CA A 243
5
AC5
SOFTWARE
GLU C:119 , ASP C:121 , ASP C:129 , HIS C:136 , HOH C:341 , HOH C:342
BINDING SITE FOR RESIDUE MN C 240
6
AC6
SOFTWARE
ASP C:121 , PHE C:123 , ASN C:125 , ASP C:129 , HOH C:343 , HOH C:344
BINDING SITE FOR RESIDUE CA C 243
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LECTIN_LEGUME_BETA (A:116-122,C:116-122)
2: LECTIN_LEGUME_ALPHA (B:203-212,D:203-212)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LECTIN_LEGUME_BETA
PS00307
Legume lectins beta-chain signature.
LEC_PEA
146-152
2
A:116-122
C:116-122
2
LECTIN_LEGUME_ALPHA
PS00308
Legume lectins alpha-chain signature.
LEC_PEA
233-242
2
B:203-212
D:203-212
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1rin_1 (A:,B:)
1b: SCOP_d1rin_2 (C:,D:)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Legume lectin
(110)
Pea (Pisum sativum) [TaxId: 3888]
(6)
1a
d1rin.1
A:,B:
1b
d1rin.2
C:,D:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1rinA00 (A:1-180)
1b: CATH_1rinC00 (C:1-180)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Pea (Pisum sativum)
(4)
1a
1rinA00
A:1-180
1b
1rinC00
C:1-180
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1rinD01 (D:188-230)
1b: PFAM_Lectin_legB_1rinD02 (D:188-230)
1c: PFAM_Lectin_legB_1rinD03 (D:188-230)
1d: PFAM_Lectin_legB_1rinD04 (D:188-230)
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Pisum sativum (Garden pea)
(3)
1a
Lectin_legB-1rinD01
D:188-230
1b
Lectin_legB-1rinD02
D:188-230
1c
Lectin_legB-1rinD03
D:188-230
1d
Lectin_legB-1rinD04
D:188-230
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Asymmetric Unit 1
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Asym.Unit (81 KB)
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Biol.Unit 1 (76 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
Biol.Unit 3 (39 KB)
Header - Biol.Unit 3
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