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1RHY
Biol. Unit 2
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Asym.Unit (72 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IMIDAZOLE GLYCEROL PHOSPHATE DEHYDRATASE
Authors
:
S. C. Sinha, B. N. Chaudhuri, J. W. Burgner, G. Yakovleva, V. J. Davisson J. L. Smith
Date
:
14 Nov 03 (Deposition) - 04 May 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Dehydratases; Histidine Biosynthesis; Left-Handed B-A-B Crossover Motif; Gene Duplication, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Sinha, B. N. Chaudhuri, J. W. Burgner, G. Yakovleva, V. J. Davisson, J. L. Smith
Crystal Structure Of Imidazole Glycerol-Phosphate Dehydratase: Duplication Of An Unusual Fold
J. Biol. Chem. V. 279 15491 2004
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Hetero Components
(4, 51)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
2a: ETHYL MERCURY ION (EMCa)
2b: ETHYL MERCURY ION (EMCb)
2c: ETHYL MERCURY ION (EMCc)
2d: ETHYL MERCURY ION (EMCd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: MERCURY (II) ION (HGa)
4b: MERCURY (II) ION (HGb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
21
Ligand/Ion
ACETIC ACID
2
EMC
6
Ligand/Ion
ETHYL MERCURY ION
3
GOL
18
Ligand/Ion
GLYCEROL
4
HG
-1
Ligand/Ion
MERCURY (II) ION
5
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(18, 18)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC5 (SOFTWARE)
03: AC6 (SOFTWARE)
04: AC8 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
11: BC8 (SOFTWARE)
12: BC9 (SOFTWARE)
13: CC1 (SOFTWARE)
14: CC2 (SOFTWARE)
15: CC3 (SOFTWARE)
16: CC4 (SOFTWARE)
17: CC5 (SOFTWARE)
18: CC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
THR B:38 , CYS B:62
BINDING SITE FOR RESIDUE HG B 9503
02
AC5
SOFTWARE
PHE B:122 , CYS B:124 , SER B:142
BINDING SITE FOR RESIDUE EMC B 9501
03
AC6
SOFTWARE
THR B:38 , CYS B:62 , THR B:73 , CYS B:77
BINDING SITE FOR RESIDUE EMC B 9502
04
AC8
SOFTWARE
HIS B:53 , ARG B:97 , LYS B:175 , HOH B:9504 , HOH B:9593
BINDING SITE FOR RESIDUE SO4 B 302
05
AC9
SOFTWARE
GLU A:164 , HOH A:5576 , ASN B:165 , ASN B:166 , HIS B:167
BINDING SITE FOR RESIDUE SO4 B 303
06
BC3
SOFTWARE
GLU A:139 , HIS A:143 , ARG B:119
BINDING SITE FOR RESIDUE ACY B 311
07
BC4
SOFTWARE
HIS B:16 , HOH B:9616 , HOH B:9623
BINDING SITE FOR RESIDUE ACY B 312
08
BC5
SOFTWARE
LYS B:93 , GLY B:94 , HOH B:9581
BINDING SITE FOR RESIDUE ACY B 313
09
BC6
SOFTWARE
ARG B:162 , GOL B:325 , HOH B:9541 , HOH B:9591
BINDING SITE FOR RESIDUE ACY B 314
10
BC7
SOFTWARE
SER B:7 , SER B:18 , THR B:20 , HOH B:9554 , HOH B:9590
BINDING SITE FOR RESIDUE ACY B 315
11
BC8
SOFTWARE
THR B:48 , HOH B:9551
BINDING SITE FOR RESIDUE ACY B 316
12
BC9
SOFTWARE
LYS B:52 , HOH B:9581 , HOH B:9593
BINDING SITE FOR RESIDUE ACY B 317
13
CC1
SOFTWARE
GLY B:134 , HIS B:167 , HOH B:9572
BINDING SITE FOR RESIDUE GOL B 321
14
CC2
SOFTWARE
ARG B:92 , SER B:118 , HOH B:9565 , HOH B:9596
BINDING SITE FOR RESIDUE GOL B 322
15
CC3
SOFTWARE
LYS B:96 , MET B:183 , GOL B:324 , HOH B:9514 , HOH B:9576 , HOH B:9609 , HOH B:9628 , HOH B:9629
BINDING SITE FOR RESIDUE GOL B 323
16
CC4
SOFTWARE
GOL B:323 , HOH B:9627 , HOH B:9629 , HOH B:9630 , HOH B:9631
BINDING SITE FOR RESIDUE GOL B 324
17
CC5
SOFTWARE
ACY B:314 , HOH B:9610 , HOH B:9611
BINDING SITE FOR RESIDUE GOL B 325
18
CC6
SOFTWARE
ILE B:5 , SER B:7 , HOH B:9549 , HOH B:9570 , HOH B:9597 , HOH B:9619
BINDING SITE FOR RESIDUE GOL B 327
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: IGP_DEHYDRATASE_1 (B:73-81)
2: IGP_DEHYDRATASE_2 (B:163-175)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IGP_DEHYDRATASE_1
PS00954
Imidazoleglycerol-phosphate dehydratase signature 1.
HIS7_CRYNB
68-81
3
-
B:73-81
HIS7_CRYNJ
68-81
3
-
B:73-81
2
IGP_DEHYDRATASE_2
PS00955
Imidazoleglycerol-phosphate dehydratase signature 2.
HIS7_CRYNB
163-175
3
-
B:163-175
HIS7_CRYNJ
163-175
3
-
B:163-175
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1rhya1 (A:2-93)
1b: SCOP_d1rhya2 (A:94-187)
1c: SCOP_d1rhyb1 (B:2-93)
1d: SCOP_d1rhyb2 (B:94-188)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Imidazole glycerol phosphate dehydratase
(4)
Protein domain
:
Imidazole glycerol phosphate dehydratase
(3)
Fungus (Filobasidiella neoformans) [TaxId: 5207]
(1)
1a
d1rhya1
A:2-93
1b
d1rhya2
A:94-187
1c
d1rhyb1
B:2-93
1d
d1rhyb2
B:94-188
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1rhyA02 (A:97-187)
1b: CATH_1rhyB02 (B:97-188)
1c: CATH_1rhyA01 (A:2-96)
1d: CATH_1rhyB01 (B:2-96)
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(
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
Imidazole glycerol phosphate dehydratase; domain 1
(3)
Filobasidiella neoformans. Organism_taxid: 5207.
(1)
1a
1rhyA02
A:97-187
1b
1rhyB02
B:97-188
1c
1rhyA01
A:2-96
1d
1rhyB01
B:2-96
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain B
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