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1RHY
Asym. Unit
Info
Asym.Unit (72 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (100 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF IMIDAZOLE GLYCEROL PHOSPHATE DEHYDRATASE
Authors
:
S. C. Sinha, B. N. Chaudhuri, J. W. Burgner, G. Yakovleva, V. J. Davisson J. L. Smith
Date
:
14 Nov 03 (Deposition) - 04 May 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Dehydratases; Histidine Biosynthesis; Left-Handed B-A-B Crossover Motif; Gene Duplication, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Sinha, B. N. Chaudhuri, J. W. Burgner, G. Yakovleva, V. J. Davisson, J. L. Smith
Crystal Structure Of Imidazole Glycerol-Phosphate Dehydratase: Duplication Of An Unusual Fold
J. Biol. Chem. V. 279 15491 2004
[
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Hetero Components
(5, 25)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
1e: ACETIC ACID (ACYe)
1f: ACETIC ACID (ACYf)
1g: ACETIC ACID (ACYg)
2a: ETHYL MERCURY ION (EMCa)
2b: ETHYL MERCURY ION (EMCb)
2c: ETHYL MERCURY ION (EMCc)
2d: ETHYL MERCURY ION (EMCd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
4a: MERCURY (II) ION (HGa)
4b: MERCURY (II) ION (HGb)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
7
Ligand/Ion
ACETIC ACID
2
EMC
4
Ligand/Ion
ETHYL MERCURY ION
3
GOL
7
Ligand/Ion
GLYCEROL
4
HG
2
Ligand/Ion
MERCURY (II) ION
5
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:38 , CYS A:62
BINDING SITE FOR RESIDUE HG A 5503
02
AC2
SOFTWARE
THR B:38 , CYS B:62
BINDING SITE FOR RESIDUE HG B 9503
03
AC3
SOFTWARE
PHE A:122 , CYS A:124
BINDING SITE FOR RESIDUE EMC A 5501
04
AC4
SOFTWARE
THR A:38 , CYS A:62 , CYS A:77 , HOH A:5589
BINDING SITE FOR RESIDUE EMC A 5502
05
AC5
SOFTWARE
PHE B:122 , CYS B:124 , SER B:142
BINDING SITE FOR RESIDUE EMC B 9501
06
AC6
SOFTWARE
THR B:38 , CYS B:62 , THR B:73 , CYS B:77
BINDING SITE FOR RESIDUE EMC B 9502
07
AC7
SOFTWARE
LYS A:52 , HIS A:53 , ARG A:97 , LYS A:175 , HOH A:5504 , HOH A:5585
BINDING SITE FOR RESIDUE SO4 A 301
08
AC8
SOFTWARE
HIS B:53 , ARG B:97 , LYS B:175 , HOH B:9504 , HOH B:9593
BINDING SITE FOR RESIDUE SO4 B 302
09
AC9
SOFTWARE
GLU A:164 , HOH A:5576 , ASN B:165 , ASN B:166 , HIS B:167
BINDING SITE FOR RESIDUE SO4 B 303
10
BC1
SOFTWARE
ASN A:165 , ASN A:166 , HIS A:167 , HOH A:5560
BINDING SITE FOR RESIDUE SO4 A 304
11
BC2
SOFTWARE
ASN A:35 , VAL A:36 , GLN A:61
BINDING SITE FOR RESIDUE SO4 A 305
12
BC3
SOFTWARE
GLU A:139 , HIS A:143 , ARG B:119
BINDING SITE FOR RESIDUE ACY B 311
13
BC4
SOFTWARE
HIS B:16 , HOH B:9616 , HOH B:9623
BINDING SITE FOR RESIDUE ACY B 312
14
BC5
SOFTWARE
LYS B:93 , GLY B:94 , HOH B:9581
BINDING SITE FOR RESIDUE ACY B 313
15
BC6
SOFTWARE
ARG B:162 , GOL B:325 , HOH B:9541 , HOH B:9591
BINDING SITE FOR RESIDUE ACY B 314
16
BC7
SOFTWARE
SER B:7 , SER B:18 , THR B:20 , HOH B:9554 , HOH B:9590
BINDING SITE FOR RESIDUE ACY B 315
17
BC8
SOFTWARE
THR B:48 , HOH B:9551
BINDING SITE FOR RESIDUE ACY B 316
18
BC9
SOFTWARE
LYS B:52 , HOH B:9581 , HOH B:9593
BINDING SITE FOR RESIDUE ACY B 317
19
CC1
SOFTWARE
GLY B:134 , HIS B:167 , HOH B:9572
BINDING SITE FOR RESIDUE GOL B 321
20
CC2
SOFTWARE
ARG B:92 , SER B:118 , HOH B:9565 , HOH B:9596
BINDING SITE FOR RESIDUE GOL B 322
21
CC3
SOFTWARE
LYS B:96 , MET B:183 , GOL B:324 , HOH B:9514 , HOH B:9576 , HOH B:9609 , HOH B:9628 , HOH B:9629
BINDING SITE FOR RESIDUE GOL B 323
22
CC4
SOFTWARE
GOL B:323 , HOH B:9627 , HOH B:9629 , HOH B:9630 , HOH B:9631
BINDING SITE FOR RESIDUE GOL B 324
23
CC5
SOFTWARE
ACY B:314 , HOH B:9610 , HOH B:9611
BINDING SITE FOR RESIDUE GOL B 325
24
CC6
SOFTWARE
ILE B:5 , SER B:7 , HOH B:9549 , HOH B:9570 , HOH B:9597 , HOH B:9619
BINDING SITE FOR RESIDUE GOL B 327
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: IGP_DEHYDRATASE_1 (A:73-81,B:73-81,A:73-81,B:73-81)
2: IGP_DEHYDRATASE_2 (A:163-175,B:163-175,A:163-175,B:16...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IGP_DEHYDRATASE_1
PS00954
Imidazoleglycerol-phosphate dehydratase signature 1.
HIS7_CRYNB
68-81
2
A:73-81
B:73-81
HIS7_CRYNJ
68-81
2
A:73-81
B:73-81
2
IGP_DEHYDRATASE_2
PS00955
Imidazoleglycerol-phosphate dehydratase signature 2.
HIS7_CRYNB
163-175
2
A:163-175
B:163-175
HIS7_CRYNJ
163-175
2
A:163-175
B:163-175
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1rhya1 (A:2-93)
1b: SCOP_d1rhya2 (A:94-187)
1c: SCOP_d1rhyb1 (B:2-93)
1d: SCOP_d1rhyb2 (B:94-188)
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Classes
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)
(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Imidazole glycerol phosphate dehydratase
(4)
Protein domain
:
Imidazole glycerol phosphate dehydratase
(3)
Fungus (Filobasidiella neoformans) [TaxId: 5207]
(1)
1a
d1rhya1
A:2-93
1b
d1rhya2
A:94-187
1c
d1rhyb1
B:2-93
1d
d1rhyb2
B:94-188
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1rhyA02 (A:97-187)
1b: CATH_1rhyB02 (B:97-188)
1c: CATH_1rhyA01 (A:2-96)
1d: CATH_1rhyB01 (B:2-96)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
Imidazole glycerol phosphate dehydratase; domain 1
(3)
Filobasidiella neoformans. Organism_taxid: 5207.
(1)
1a
1rhyA02
A:97-187
1b
1rhyB02
B:97-188
1c
1rhyA01
A:2-96
1d
1rhyB01
B:2-96
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asymmetric Unit 1
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