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Getting 'Exon' information from database.
1RHG
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
THE STRUCTURE OF GRANULOCYTE-COLONY-STIMULATING FACTOR AND ITS RELATIONSHIP TO THOSE OF OTHER GROWTH FACTORS
Authors
:
C. P. Hill, T. D. Osslund, D. Eisenberg
Date
:
29 Jan 93 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Growth Factor
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. P. Hill, T. D. Osslund, D. Eisenberg
The Structure Of Granulocyte-Colony-Stimulating Factor And Its Relationship To Other Growth Factors.
Proc. Natl. Acad. Sci. Usa V. 90 5167 1993
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_013073 (L124M, chain A/C, )
2: VAR_013074 (A141T, chain A/B/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013073
L
157
M
CSF3_HUMAN
Polymorphism
2227329
A/C
L
124
M
2
UniProt
VAR_013074
A
174
T
CSF3_HUMAN
Polymorphism
2227330
A/B/C
A
141
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: INTERLEUKIN_6 (A:71-89,B:64-89,C:71-89)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INTERLEUKIN_6
PS00254
Interleukin-6 / G-CSF / MGF signature.
CSF3_HUMAN
97-122
3
A:71-89
B:64-89
C:71-89
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Exons
(4, 12)
Info
All Exons
Exon 1.1f (A:9-35 | B:9-35 | C:9-35)
Exon 1.2a (A:36-71 (gaps) | B:36-71 (gaps) | ...)
Exon 1.2c (A:72-120 | B:72-120 | C:72-120)
Exon 1.3c (A:121-172 (gaps) | B:121-172 (gaps...)
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All Exon Boundaries
1: Boundary 1.1b/1.1f
2: Boundary 1.1f/1.2a
3: Boundary 1.2a/1.2c
4: Boundary 1.2c/1.3c
5: Boundary 1.3c/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000225474
1b
ENSE00001309996
chr17:
38171697-38171767
71
CSF3_HUMAN
1-14
14
0
-
-
1.1f
ENST00000225474
1f
ENSE00000950689
chr17:
38171944-38172107
164
CSF3_HUMAN
14-68
55
3
A:9-35
B:9-35
C:9-35
27
27
27
1.2a
ENST00000225474
2a
ENSE00000950690
chr17:
38172486-38172593
108
CSF3_HUMAN
69-104
36
3
A:36-71 (gaps)
B:36-71 (gaps)
C:36-71 (gaps)
36
36
36
1.2c
ENST00000225474
2c
ENSE00000950691
chr17:
38172738-38172884
147
CSF3_HUMAN
105-153
49
3
A:72-120
B:72-120
C:72-120
49
49
49
1.3c
ENST00000225474
3c
ENSE00001268721
chr17:
38173048-38174066
1019
CSF3_HUMAN
154-207
54
3
A:121-172 (gaps)
B:121-172 (gaps)
C:121-172 (gaps)
52
52
52
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SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1rhga_ (A:)
1b: SCOP_d1rhgb_ (B:)
1c: SCOP_d1rhgc_ (C:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
4-helical cytokines
(168)
Superfamily
:
4-helical cytokines
(168)
Family
:
Long-chain cytokines
(46)
Protein domain
:
Granulocyte-colony stimulating factor (G-CSF)
(7)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1rhga_
A:
1b
d1rhgb_
B:
1c
d1rhgc_
C:
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1rhgB00 (B:9-172)
1b: CATH_1rhgA00 (A:9-172)
1c: CATH_1rhgC00 (C:9-172)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Growth Hormone; Chain: A;
(136)
Homologous Superfamily
:
[code=1.20.1250.10, no name defined]
(130)
Human (Homo sapiens)
(110)
1a
1rhgB00
B:9-172
1b
1rhgA00
A:9-172
1c
1rhgC00
C:9-172
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_IL6_1rhgC01 (C:21-169)
1b: PFAM_IL6_1rhgC02 (C:21-169)
1c: PFAM_IL6_1rhgC03 (C:21-169)
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Clan
:
4H_Cytokine
(48)
Family
:
IL6
(3)
Homo sapiens (Human)
(3)
1a
IL6-1rhgC01
C:21-169
1b
IL6-1rhgC02
C:21-169
1c
IL6-1rhgC03
C:21-169
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Asymmetric Unit 1
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