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1RHF
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (34 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN TYRO3-D1D2
Authors
:
C. Heiring, B. Dahlback, Y. A. Muller
Date
:
14 Nov 03 (Deposition) - 23 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Axl/Tyro3 Family, Cellular Adhesion, Ligand-Independent Dimerization, Mutational Analysis, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Heiring, B. Dahlback, Y. A. Muller
Ligand Recognition And Homophilic Interactions In Tyro3: Structural Insights Into The Axl/Tyro3 Receptor Tyrosine Kinase Family.
J. Biol. Chem. V. 279 6952 2004
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
4
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:166 , ACT A:302 , HOH A:423 , HIS B:166
BINDING SITE FOR RESIDUE ZN A 301
2
AC2
SOFTWARE
HIS A:166 , ASN A:167 , LEU A:168 , ZN A:301 , HOH A:363 , HIS B:166
BINDING SITE FOR RESIDUE ACT A 302
3
AC3
SOFTWARE
ARG A:74 , THR A:176
BINDING SITE FOR RESIDUE ACT A 303
4
AC4
SOFTWARE
ARG B:74 , TRP B:76 , THR B:176 , EPE B:306 , HOH B:342
BINDING SITE FOR RESIDUE ACT B 304
5
AC5
SOFTWARE
ASP A:107 , LEU A:108 , HIS A:180 , ASP B:107 , LEU B:108 , ALA B:109 , HIS B:180 , HOH B:419
BINDING SITE FOR RESIDUE ACT A 305
6
AC6
SOFTWARE
TRP B:76 , ILE B:87 , SER B:88 , ACT B:304 , HOH B:388
BINDING SITE FOR RESIDUE EPE B 306
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
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Exons
(4, 8)
Info
All Exons
Exon 1.2 (A:7-63 | B:7-63)
Exon 1.3 (A:63-97 | B:63-97)
Exon 1.4 (A:97-154 | B:97-154)
Exon 1.5 (A:154-182 | B:154-182)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000263798
1
ENSE00001152512
chr15:
41851232-41851579
348
TYRO3_HUMAN
1-42
42
0
-
-
1.2
ENST00000263798
2
ENSE00001106734
chr15:
41853325-41853508
184
TYRO3_HUMAN
42-103
62
2
A:7-63
B:7-63
57
57
1.3
ENST00000263798
3
ENSE00000586489
chr15:
41853737-41853837
101
TYRO3_HUMAN
103-137
35
2
A:63-97
B:63-97
35
35
1.4
ENST00000263798
4
ENSE00000676763
chr15:
41854746-41854916
171
TYRO3_HUMAN
137-194
58
2
A:97-154
B:97-154
58
58
1.5
ENST00000263798
5
ENSE00000586496
chr15:
41856382-41856468
87
TYRO3_HUMAN
194-223
30
2
A:154-182
B:154-182
29
29
1.6
ENST00000263798
6
ENSE00000676767
chr15:
41857224-41857339
116
TYRO3_HUMAN
223-261
39
0
-
-
1.7
ENST00000263798
7
ENSE00000586427
chr15:
41859558-41859735
178
TYRO3_HUMAN
262-321
60
0
-
-
1.8
ENST00000263798
8
ENSE00000676806
chr15:
41860415-41860560
146
TYRO3_HUMAN
321-369
49
0
-
-
1.9
ENST00000263798
9
ENSE00000586436
chr15:
41861076-41861220
145
TYRO3_HUMAN
370-418
49
0
-
-
1.10
ENST00000263798
10
ENSE00000676821
chr15:
41862225-41862354
130
TYRO3_HUMAN
418-461
44
0
-
-
1.11
ENST00000263798
11
ENSE00000586447
chr15:
41862438-41862538
101
TYRO3_HUMAN
461-495
35
0
-
-
1.12
ENST00000263798
12
ENSE00000586453
chr15:
41862802-41862897
96
TYRO3_HUMAN
495-527
33
0
-
-
1.13
ENST00000263798
13
ENSE00000676824
chr15:
41863236-41863316
81
TYRO3_HUMAN
527-554
28
0
-
-
1.14
ENST00000263798
14
ENSE00000586464
chr15:
41863793-41863885
93
TYRO3_HUMAN
554-585
32
0
-
-
1.15
ENST00000263798
15
ENSE00000676826
chr15:
41864641-41864762
122
TYRO3_HUMAN
585-625
41
0
-
-
1.16
ENST00000263798
16
ENSE00000586471
chr15:
41865200-41865309
110
TYRO3_HUMAN
626-662
37
0
-
-
1.17
ENST00000263798
17
ENSE00000884066
chr15:
41865506-41865665
160
TYRO3_HUMAN
662-715
54
0
-
-
1.18
ENST00000263798
18
ENSE00000676867
chr15:
41865877-41866013
137
TYRO3_HUMAN
716-761
46
0
-
-
1.19
ENST00000263798
19
ENSE00001152503
chr15:
41870084-41871536
1453
TYRO3_HUMAN
761-890
130
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1rhfa2 (A:98-182)
1b: SCOP_d1rhfb2 (B:98-182)
2a: SCOP_d1rhfa1 (A:7-97)
2b: SCOP_d1rhfb1 (B:7-97)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
I set domains
(152)
Protein domain
:
Tyrosine-protein kinase receptor tyro3, second domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1rhfa2
A:98-182
1b
d1rhfb2
B:98-182
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Tyrosine-protein kinase receptor tyro3, N-terminal domain
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1rhfa1
A:7-97
2b
d1rhfb1
B:7-97
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1rhfA01 (A:7-97)
1b: CATH_1rhfB01 (B:7-97)
1c: CATH_1rhfA02 (A:98-182)
1d: CATH_1rhfB02 (B:98-182)
View:
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1rhfA01
A:7-97
1b
1rhfB01
B:7-97
1c
1rhfA02
A:98-182
1d
1rhfB02
B:98-182
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_I_set_1rhfB01 (B:7-95)
1b: PFAM_I_set_1rhfB02 (B:7-95)
2a: PFAM_Ig_3_1rhfB03 (B:102-167)
2b: PFAM_Ig_3_1rhfB04 (B:102-167)
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Organisms
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)
Clan
:
Ig
(577)
Family
:
I-set
(67)
Homo sapiens (Human)
(50)
1a
I-set-1rhfB01
B:7-95
1b
I-set-1rhfB02
B:7-95
Family
:
Ig_3
(11)
Homo sapiens (Human)
(9)
2a
Ig_3-1rhfB03
B:102-167
2b
Ig_3-1rhfB04
B:102-167
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