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1RGI
Asym. Unit
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Asym.Unit (120 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GELSOLIN DOMAINS G1-G3 BOUND TO ACTIN
Authors
:
L. D. Burtnick, D. Urosev, E. Irobi, K. Narayan, R. C. Robinson
Date
:
12 Nov 03 (Deposition) - 27 Jul 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,G
Biol. Unit 1: A,G (1x)
Keywords
:
Domain Movement, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
L. D. Burtnick, D. Urosev, E. Irobi, K. Narayan, R. C. Robinson
Structure Of The N-Terminal Half Of Gelsolin Bound To Actin Roles In Severing, Apoptosis And Faf
Embo J. V. 23 2713 2004
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
4
Ligand/Ion
CALCIUM ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY G:65 , ASP G:66 , GLU G:97 , VAL G:145
BINDING SITE FOR RESIDUE CA G 403
2
AC2
SOFTWARE
GLU A:167 , HOH A:402 , ASP G:109 , GLY G:114 , ALA G:116
BINDING SITE FOR RESIDUE CA G 404
3
AC3
SOFTWARE
GLU G:302 , ASP G:303 , GLU G:327
BINDING SITE FOR RESIDUE CA G 406
4
AC4
SOFTWARE
ATP A:380
BINDING SITE FOR RESIDUE CA A 401
5
AC5
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , CA A:401
BINDING SITE FOR RESIDUE ATP A 380
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 5)
Info
All SCOP Domains
1a: SCOP_d1rgig1 (G:26-152)
1b: SCOP_d1rgig2 (G:153-262)
1c: SCOP_d1rgig3 (G:263-371)
2a: SCOP_d1rgia1 (A:5-146)
2b: SCOP_d1rgia2 (A:147-365)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Gelsolin-like
(96)
Superfamily
:
Actin depolymerizing proteins
(88)
Family
:
Gelsolin-like
(43)
Protein domain
:
Gelsolin
(33)
Horse (Equus caballus) [TaxId: 9796]
(2)
1a
d1rgig1
G:26-152
1b
d1rgig2
G:153-262
1c
d1rgig3
G:263-371
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
Actin
(69)
Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
(55)
2a
d1rgia1
A:5-146
2b
d1rgia2
A:147-365
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CATH Domains
(4, 7)
Info
all CATH domains
1a: CATH_1rgiA01 (A:6-34,A:71-134,A:337-375)
1b: CATH_1rgiA03 (A:136-181,A:271-332)
2a: CATH_1rgiG01 (G:26-154)
2b: CATH_1rgiG02 (G:155-260)
2c: CATH_1rgiG03 (G:261-371)
3a: CATH_1rgiA04 (A:182-267)
4a: CATH_1rgiA02 (A:35-68)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Horse (Equus caballus)
(1)
1a
1rgiA01
A:6-34,A:71-134,A:337-375
1b
1rgiA03
A:136-181,A:271-332
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Severin
(74)
Homologous Superfamily
:
Severin
(74)
Horse (Equus caballus)
(3)
2a
1rgiG01
G:26-154
2b
1rgiG02
G:155-260
2c
1rgiG03
G:261-371
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Horse (Equus caballus)
(1)
3a
1rgiA04
A:182-267
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Actin; Chain A, domain 2
(36)
Homologous Superfamily
:
Actin; Chain A, domain 2
(36)
Horse (Equus caballus)
(1)
4a
1rgiA02
A:35-68
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Gelsolin_1rgiG01 (G:286-363)
1b: PFAM_Gelsolin_1rgiG02 (G:286-363)
1c: PFAM_Gelsolin_1rgiG03 (G:286-363)
2a: PFAM_Actin_1rgiA01 (A:5-375)
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)
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)
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)
Clan
:
ADF
(44)
Family
:
Gelsolin
(23)
Equus caballus (Horse)
(1)
1a
Gelsolin-1rgiG01
G:286-363
1b
Gelsolin-1rgiG02
G:286-363
1c
Gelsolin-1rgiG03
G:286-363
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
2a
Actin-1rgiA01
A:5-375
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Asymmetric Unit 1
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