PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1RG6
Asym. Unit
Info
Asym.Unit (358 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF P63
Authors
:
B. Cadot, E. Candi, D. O. Cicero, A. Desideri, S. Mele, G. Melino, M. Paci
Date
:
11 Nov 03 (Deposition) - 23 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
P73 Sam-Like Domain, Gene Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Cadot, E. Candi, D. O. Cicero, A. Desideri, S. Mele, G. Melino, M. Paci
Solution Structure Of The C-Terminal Domain Of P63
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_035128 (I10T, chain A, )
2: VAR_020879 (L14F, chain A, )
3: VAR_020880 (S21A, chain A, )
4: VAR_020881 (C22G, chain A, )
5: VAR_035129 (S41P, chain A, )
6: VAR_035130 (D64H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035128
I
549
T
P63_HUMAN
Disease (EDRH)
---
A
I
10
T
2
UniProt
VAR_020879
L
553
F
P63_HUMAN
Disease (AEC)
---
A
L
14
F
3
UniProt
VAR_020880
S
560
A
P63_HUMAN
Unclassified
---
A
S
21
A
4
UniProt
VAR_020881
C
561
G
P63_HUMAN
Disease (AEC)
---
A
C
22
G
5
UniProt
VAR_035129
S
580
P
P63_HUMAN
Disease (EDRH)
---
A
S
41
P
6
UniProt
VAR_035130
D
603
H
P63_HUMAN
Polymorphism
---
A
D
64
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.15 (A:5-12)
Exon 1.16 (A:12-43)
Exon 1.17f (A:44-71)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.14/1.15
2: Boundary 1.15/1.16
3: Boundary 1.16/1.17f
4: Boundary 1.17f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000264731
1b
ENSE00001343828
chr3:
189349216-189349366
151
P63_HUMAN
1-21
21
0
-
-
1.2
ENST00000264731
2
ENSE00001184835
chr3:
189455529-189455657
129
P63_HUMAN
21-64
44
0
-
-
1.3a
ENST00000264731
3a
ENSE00001184832
chr3:
189456431-189456563
133
P63_HUMAN
64-108
45
0
-
-
1.5
ENST00000264731
5
ENSE00001150001
chr3:
189526061-189526315
255
P63_HUMAN
109-193
85
0
-
-
1.7b
ENST00000264731
7b
ENSE00000781594
chr3:
189582021-189582207
187
P63_HUMAN
194-256
63
0
-
-
1.8
ENST00000264731
8
ENSE00001073552
chr3:
189584471-189584586
116
P63_HUMAN
256-294
39
0
-
-
1.9
ENST00000264731
9
ENSE00001073559
chr3:
189585622-189585731
110
P63_HUMAN
295-331
37
0
-
-
1.10b
ENST00000264731
10b
ENSE00000871461
chr3:
189586369-189586505
137
P63_HUMAN
331-377
47
0
-
-
1.11
ENST00000264731
11
ENSE00000871462
chr3:
189587113-189587195
83
P63_HUMAN
377-404
28
0
-
-
1.12a
ENST00000264731
12a
ENSE00000871463
chr3:
189590648-189590784
137
P63_HUMAN
405-450
46
0
-
-
1.14
ENST00000264731
14
ENSE00001005407
chr3:
189604183-189604340
158
P63_HUMAN
450-503
54
0
-
-
1.15
ENST00000264731
15
ENSE00000781605
chr3:
189607129-189607273
145
P63_HUMAN
503-551
49
1
A:5-12
8
1.16
ENST00000264731
16
ENSE00000781606
chr3:
189608578-189608671
94
P63_HUMAN
551-582
32
1
A:12-43
32
1.17f
ENST00000264731
17f
ENSE00001608550
chr3:
189611995-189615068
3074
P63_HUMAN
583-680
98
1
A:44-71
28
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1rg6a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
SAM/Pointed domain
(61)
Family
:
SAM (sterile alpha motif) domain
(25)
Protein domain
:
C-terminal domain of p63
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1rg6a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1rg6A00 (A:5-71)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
Transcription Factor, Ets-1
(30)
Human (Homo sapiens)
(14)
1a
1rg6A00
A:5-71
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SAM_2_1rg6A01 (A:5-66)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SAM
(26)
Family
:
SAM_2
(8)
Homo sapiens (Human)
(6)
1a
SAM_2-1rg6A01
A:5-66
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (358 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1RG6
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help