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1RG3
Asym. Unit
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Asym.Unit (38 KB)
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Models
(10 )
Title
:
SP-B C-TERMINAL PEPTIDE IN SDS MICELLES
Authors
:
V. Booth, A. J. Waring, F. J. Walther, K. M. Keough
Date
:
11 Nov 03 (Deposition) - 28 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (10 x)
Keywords
:
Lung, Surfactant, Sp-B, Surface Active Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. Booth, A. J. Waring, F. J. Walther, K. M. Keough
Nmr Structures Of The C-Terminal Segment Of Surfactant Protein B In Detergent Micelles And Hexafluoro-2-Propanol.
Biochemistry V. 43 15187 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_013100 (R10H, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_013100
R
272
H
PSPB_HUMAN
Polymorphism
3024809
A
R
10
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(1, 1)
Info
All Exons
Exon 1.8 (A:1-16)
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All Exon Boundaries
1: Boundary 1.7/1.8
2: Boundary 1.8/1.9b
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000393822
2b
ENSE00002197707
chr2:
85895312-85895240
73
PSPB_HUMAN
1-23
23
0
-
-
1.3b
ENST00000393822
3b
ENSE00001135296
chr2:
85894929-85894802
128
PSPB_HUMAN
23-65
43
0
-
-
1.4
ENST00000393822
4
ENSE00001135287
chr2:
85894300-85894229
72
PSPB_HUMAN
66-89
24
0
-
-
1.5a
ENST00000393822
5a
ENSE00001135279
chr2:
85893865-85893740
126
PSPB_HUMAN
90-131
42
0
-
-
1.6
ENST00000393822
6
ENSE00001135274
chr2:
85892917-85892729
189
PSPB_HUMAN
132-194
63
0
-
-
1.7
ENST00000393822
7
ENSE00001135266
chr2:
85892501-85892412
90
PSPB_HUMAN
195-224
30
0
-
-
1.8
ENST00000393822
8
ENSE00001135259
chr2:
85890970-85890787
184
PSPB_HUMAN
225-286
62
1
A:1-16
16
1.9b
ENST00000393822
9b
ENSE00001135249
chr2:
85890614-85890469
146
PSPB_HUMAN
286-334
49
0
-
-
1.11
ENST00000393822
11
ENSE00001135239
chr2:
85889232-85889152
81
PSPB_HUMAN
335-361
27
0
-
-
1.12a
ENST00000393822
12a
ENSE00001154897
chr2:
85888658-85888577
82
PSPB_HUMAN
362-381
20
0
-
-
1.13a
ENST00000393822
13a
ENSE00001516582
chr2:
85886805-85884437
2369
PSPB_HUMAN
-
0
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1rg3a_ (A:)
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Protein Domains
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Organisms
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(
)
Class
:
Peptides
(792)
Fold
:
Transmembrane helical fragments
(68)
Superfamily
:
Transmembrane helical fragments
(68)
Family
:
Transmembrane helical fragments
(68)
Protein domain
:
Surfactant Protein B (SP-B) miniprotein constructs
(7)
Synthetic, based on Homo sapiens sequence
(7)
1a
d1rg3a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SapB_2_1rg3A01 (A:1-15)
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Clan
:
no clan defined [family: SapB_2]
(17)
Family
:
SapB_2
(17)
Homo sapiens (Human)
(11)
1a
SapB_2-1rg3A01
A:1-15
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Chain A
Asymmetric Unit 1
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