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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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1R9Z
Asym. Unit
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Asym.Unit (83 KB)
Biol.Unit 1 (452 KB)
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(1)
Title
:
BACTERIAL CYTOSINE DEAMINASE D314S MUTANT.
Authors
:
S. D. Mahan, G. C. Ireton, B. L. Stoddard, M. E. Black
Date
:
31 Oct 03 (Deposition) - 05 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.32
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Cytosine Deaminase, Hydrolase, Alpha-Beta Barrel, Hexamer, Domain Swap, D314S Mutant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. D. Mahan, G. C. Ireton, C. Knoeber, B. L. Stoddard, M. E. Black
Random Mutagenesis And Selection Of Escherichia Coli Cytosine Deaminase For Cancer Gene Therapy.
Protein Eng. Des. Sel. V. 17 625 2004
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: FE (III) ION (FEa)
2a: GLYCEROL (GOLa)
3a: MAGNESIUM ION (MGa)
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Label:
No.
Name
Count
Type
Full Name
1
FE
1
Ligand/Ion
FE (III) ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:61 , HIS A:63 , HIS A:214 , MG A:502 , HOH A:601
BINDING SITE FOR RESIDUE FE A 501
2
AC2
SOFTWARE
FE A:501 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:604 , HOH A:605 , HOH A:606
BINDING SITE FOR RESIDUE MG A 502
3
AC3
SOFTWARE
ALA A:128 , LYS A:134 , GLU A:171 , ARG A:174 , LEU A:175 , HOH A:798 , HOH A:916 , HOH A:984 , HOH A:1069
BINDING SITE FOR RESIDUE GOL A 503
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_CODA_ECOLI_001 (R12W, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CODA_ECOLI_001
*
R
13
W
CODA_ECOLI
---
---
A
R
12
W
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1r9za1 (A:4-55,A:376-426)
2a: SCOP_d1r9za2 (A:56-375)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Composite domain of metallo-dependent hydrolases
(103)
Superfamily
:
Composite domain of metallo-dependent hydrolases
(103)
Family
:
Cytosine deaminase
(8)
Protein domain
:
Cytosine deaminase
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d1r9za1
A:4-55,A:376-426
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
Cytosine deaminase catalytic domain
(8)
Protein domain
:
Cytosine deaminase catalytic domain
(8)
Escherichia coli [TaxId: 562]
(8)
2a
d1r9za2
A:56-375
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1r9zA02 (A:57-364)
2a: CATH_1r9zA01 (A:4-56,A:365-426)
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)
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)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Escherichia coli. Organism_taxid: 562.
(27)
1a
1r9zA02
A:57-364
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Urease, subunit C; domain 1
(95)
Homologous Superfamily
:
Urease, subunit C, domain 1
(95)
Escherichia coli. Organism_taxid: 562.
(12)
2a
1r9zA01
A:4-56,A:365-426
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Amidohydro_3_1r9zA01 (A:52-378)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Amidohydrolase
(126)
Family
:
Amidohydro_3
(16)
Escherichia coli (strain K12)
(6)
1a
Amidohydro_3-1r9zA01
A:52-378
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Chain A
Asymmetric Unit 1
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Asym.Unit (83 KB)
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