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1R9X
Biol. Unit 1
Info
Asym.Unit (82 KB)
Biol.Unit 1 (451 KB)
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(1)
Title
:
BACTERIAL CYTOSINE DEAMINASE D314G MUTANT.
Authors
:
S. D. Mahan, G. C. Ireton, B. L. Stoddard, M. E. Black
Date
:
31 Oct 03 (Deposition) - 05 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.58
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Cytosine Deaminase, Hydrolase, Alpha-Beta Barrel, Hexamer, Domain Swap, D314G Mutant
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. D. Mahan, G. C. Ireton, C. Knoeber, B. L. Stoddard, M. E. Black
Random Mutagenesis And Selection Of Escherichia Coli Cytosine Deaminase For Cancer Gene Therapy.
Protein Eng. Des. Sel. V. 17 625 2004
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: FE (III) ION (FEa)
2a: GLYCEROL (GOLa)
3a: MAGNESIUM ION (MGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE
-1
Ligand/Ion
FE (III) ION
2
GOL
6
Ligand/Ion
GLYCEROL
3
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:61 , HIS A:63 , HIS A:214 , ASP A:313 , MG A:502 , HOH A:600
BINDING SITE FOR RESIDUE FE A 501
2
AC2
SOFTWARE
FE A:501 , HOH A:600 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:604 , HOH A:605
BINDING SITE FOR RESIDUE MG A 502
3
AC3
SOFTWARE
ALA A:128 , LYS A:134 , GLU A:171 , ARG A:174 , LEU A:175 , HOH A:801 , HOH A:911 , HOH A:1043
BINDING SITE FOR RESIDUE GOL A 503
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SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_CODA_ECOLI_001 (R12W, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_CODA_ECOLI_001
*
R
13
W
CODA_ECOLI
---
---
A
R
12
W
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1r9xa1 (A:4-55,A:376-426)
2a: SCOP_d1r9xa2 (A:56-375)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Composite domain of metallo-dependent hydrolases
(103)
Superfamily
:
Composite domain of metallo-dependent hydrolases
(103)
Family
:
Cytosine deaminase
(8)
Protein domain
:
Cytosine deaminase
(8)
Escherichia coli [TaxId: 562]
(8)
1a
d1r9xa1
A:4-55,A:376-426
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Metallo-dependent hydrolases
(273)
Family
:
Cytosine deaminase catalytic domain
(8)
Protein domain
:
Cytosine deaminase catalytic domain
(8)
Escherichia coli [TaxId: 562]
(8)
2a
d1r9xa2
A:56-375
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1r9xA02 (A:57-364)
2a: CATH_1r9xA01 (A:4-56,A:365-426)
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(
)
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
Escherichia coli. Organism_taxid: 562.
(27)
1a
1r9xA02
A:57-364
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Urease, subunit C; domain 1
(95)
Homologous Superfamily
:
Urease, subunit C, domain 1
(95)
Escherichia coli. Organism_taxid: 562.
(12)
2a
1r9xA01
A:4-56,A:365-426
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Amidohydro_3_1r9xA01 (A:52-378)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Amidohydrolase
(126)
Family
:
Amidohydro_3
(16)
Escherichia coli (strain K12)
(6)
1a
Amidohydro_3-1r9xA01
A:52-378
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
Asymmetric Unit 5
Asymmetric Unit 6
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Asym.Unit (82 KB)
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Header - Biol.Unit 1
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