PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1R9N
Asym. Unit
Info
Asym.Unit (520 KB)
Biol.Unit 1 (261 KB)
Biol.Unit 2 (255 KB)
Biol.Unit 3 (255 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN DIPEPTIDYL PEPTIDASE IV IN COMPLEX WITH A DECAPEPTIDE (TNPY) AT 2.3 ANG. RESOLUTION
Authors
:
K. Aertgeerts, S. Ye, M. G. Tennant, B. Collins, J. Rogers, B. -C. Sang, R D. R. Webb, G. S. Prasad
Date
:
30 Oct 03 (Deposition) - 29 Mar 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Biol. Unit 3: C,D,G,H (1x)
Keywords
:
Alpha/Beta Hydrolase, Eight-Bladed Beta Propeller, Serine Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Aertgeerts, S. Ye, M. G. Tennant, M. L. Kraus, J. Rogers, B. -C. Sang, R. J. Skene, D. R. Webb, G. S. Prasad
Crystal Structure Of Human Dipeptidyl Peptidase Iv In Complex With A Decapeptide Reveals Details On Substrate Specificity And Tetrahedral Intermediate Formation.
Protein Sci. V. 13 412 2004
[
close entry info
]
Hetero Components
(1, 25)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
1x: N-ACETYL-D-GLUCOSAMINE (NAGx)
1y: N-ACETYL-D-GLUCOSAMINE (NAGy)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
25
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:78 , ASN A:85 , SER A:86 , SER A:87
BINDING SITE FOR RESIDUE NAG A 851
02
AC2
SOFTWARE
ARG A:147 , ASN A:150
BINDING SITE FOR RESIDUE NAG A 1501
03
AC3
SOFTWARE
ASN A:219 , THR A:221 , GLN A:308 , GLU A:309
BINDING SITE FOR RESIDUE NAG A 2191
04
AC4
SOFTWARE
ASN A:229 , THR A:231 , GLU A:232 , NAG A:2292
BINDING SITE FOR RESIDUE NAG A 2291
05
AC5
SOFTWARE
THR A:231 , NAG A:2291
BINDING SITE FOR RESIDUE NAG A 2292
06
AC6
SOFTWARE
TRP A:187 , ASN A:281 , HOH A:6880
BINDING SITE FOR RESIDUE NAG A 2811
07
AC7
SOFTWARE
ILE A:319 , ASN A:321 , SER A:349
BINDING SITE FOR RESIDUE NAG A 3211
08
AC8
SOFTWARE
ASP A:681 , ARG A:684 , ASN A:685
BINDING SITE FOR RESIDUE NAG A 6851
09
AC9
SOFTWARE
ASN B:85 , SER B:86 , SER B:87 , HOH B:3377 , HOH B:3378 , HOH B:3402
BINDING SITE FOR RESIDUE NAG B 851
10
BC1
SOFTWARE
ASN B:150
BINDING SITE FOR RESIDUE NAG B 1501
11
BC2
SOFTWARE
ASN B:219 , THR B:221 , GLN B:308 , GLU B:309 , HOH B:3394
BINDING SITE FOR RESIDUE NAG B 2191
12
BC3
SOFTWARE
ILE B:194 , ASN B:229 , THR B:231 , GLU B:232 , NAG B:2292
BINDING SITE FOR RESIDUE NAG B 2291
13
BC4
SOFTWARE
GLU B:232 , NAG B:2291
BINDING SITE FOR RESIDUE NAG B 2292
14
BC5
SOFTWARE
TRP B:187 , ASN B:281 , HOH B:3247
BINDING SITE FOR RESIDUE NAG B 2811
15
BC6
SOFTWARE
ILE B:319 , ASN B:321 , SER B:349
BINDING SITE FOR RESIDUE NAG B 3211
16
BC7
SOFTWARE
ASN C:219 , THR C:221 , GLU C:309
BINDING SITE FOR RESIDUE NAG C 2191
17
BC8
SOFTWARE
ASN C:229 , THR C:231 , GLU C:232 , NAG C:2292
BINDING SITE FOR RESIDUE NAG C 2291
18
BC9
SOFTWARE
GLU C:232 , NAG C:2291
BINDING SITE FOR RESIDUE NAG C 2292
19
CC1
SOFTWARE
VAL C:279 , ASN C:281 , HOH C:5419
BINDING SITE FOR RESIDUE NAG C 2811
20
CC2
SOFTWARE
ILE C:319 , ASN C:321 , SER C:349 , THR C:350 , HOH C:5285
BINDING SITE FOR RESIDUE NAG C 3211
21
CC3
SOFTWARE
ASN C:520 , ARG C:581 , ASP C:605
BINDING SITE FOR RESIDUE NAG C 5201
22
CC4
SOFTWARE
ASN D:219 , THR D:221 , GLN D:308 , GLU D:309
BINDING SITE FOR RESIDUE NAG D 2191
23
CC5
SOFTWARE
ASN D:229 , THR D:231 , NAG D:2292
BINDING SITE FOR RESIDUE NAG D 2291
24
CC6
SOFTWARE
NAG D:2291 , HOH D:2837
BINDING SITE FOR RESIDUE NAG D 2292
25
CC7
SOFTWARE
TRP D:187 , ASN D:281 , HOH D:2964
BINDING SITE FOR RESIDUE NAG D 2811
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: PANCREATIC_HORMONE_2 (E:1001-1004,F:1001-1006,G:1001-100...)
2: PRO_ENDOPEP_SER (A:605-635,B:605-635,C:605-635,D:60...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PANCREATIC_HORMONE_2
PS50276
Pancreatic hormone family profile.
NPY_MACMU
29-64
4
E:1001-1004
F:1001-1006
G:1001-1004
H:1001-1005
2
PRO_ENDOPEP_SER
PS00708
Prolyl endopeptidase family serine active site.
DPP4_HUMAN
605-635
4
A:605-635
B:605-635
C:605-635
D:605-635
[
close PROSITE info
]
Exons
(24, 96)
Info
All Exons
Exon 1.3a (A:39-65 | B:36-65 | C:40-65 | D:40...)
Exon 1.4a (A:65-95 | B:65-95 | C:65-95 | D:65...)
Exon 1.5 (A:96-122 | B:96-122 | C:96-122 | D...)
Exon 1.6 (A:123-140 | B:123-140 | C:123-140 ...)
Exon 1.7b (A:140-164 | B:140-164 | C:140-164 ...)
Exon 1.8c (A:165-205 | B:165-205 | C:165-205 ...)
Exon 1.9 (A:205-258 | B:205-258 | C:205-258 ...)
Exon 1.10 (A:259-296 | B:259-296 | C:259-296 ...)
Exon 1.12 (A:296-341 | B:296-341 | C:296-341 ...)
Exon 1.13 (A:342-356 | B:342-356 | C:342-356 ...)
Exon 1.15 (A:357-392 | B:357-392 | C:357-392 ...)
Exon 1.16 (A:393-415 | B:393-415 | C:393-415 ...)
Exon 1.17 (A:415-433 | B:415-433 | C:415-433 ...)
Exon 1.18 (A:433-474 | B:433-474 | C:433-474 ...)
Exon 1.20 (A:474-490 | B:474-490 | C:474-490 ...)
Exon 1.21b (A:490-523 | B:490-523 | C:490-523 ...)
Exon 1.22a (A:523-546 | B:523-546 | C:523-546 ...)
Exon 1.23 (A:546-611 | B:546-611 | C:546-611 ...)
Exon 1.24 (A:611-629 | B:611-629 | C:611-629 ...)
Exon 1.25 (A:630-663 | B:630-663 | C:630-663 ...)
Exon 1.26a (A:663-684 | B:663-684 | C:663-684 ...)
Exon 1.27a (A:685-709 | B:685-709 | C:685-709 ...)
Exon 1.28 (A:709-733 | B:709-733 | C:709-733 ...)
Exon 1.29b (A:734-766 | B:734-766 | C:734-766 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.2b/1.3a
02: Boundary 1.3a/1.4a
03: Boundary 1.4a/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7b
06: Boundary 1.7b/1.8c
07: Boundary 1.8c/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/1.15
12: Boundary 1.15/1.16
13: Boundary 1.16/1.17
14: Boundary 1.17/1.18
15: Boundary 1.18/1.20
16: Boundary 1.20/1.21b
17: Boundary 1.21b/1.22a
18: Boundary 1.22a/1.23
19: Boundary 1.23/1.24
20: Boundary 1.24/1.25
21: Boundary 1.25/1.26a
22: Boundary 1.26a/1.27a
23: Boundary 1.27a/1.28
24: Boundary 1.28/1.29b
25: Boundary 1.29b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000360534
1a
ENSE00001428031
chr2:
162931052-162930486
567
DPP4_HUMAN
1-2
2
0
-
-
1.2b
ENST00000360534
2b
ENSE00001405430
chr2:
162929996-162929909
88
DPP4_HUMAN
3-32
30
0
-
-
1.3a
ENST00000360534
3a
ENSE00001407496
chr2:
162904011-162903913
99
DPP4_HUMAN
32-65
34
4
A:39-65
B:36-65
C:40-65
D:40-65
27
30
26
26
1.4a
ENST00000360534
4a
ENSE00001401296
chr2:
162903516-162903425
92
DPP4_HUMAN
65-95
31
4
A:65-95
B:65-95
C:65-95
D:65-95
31
31
31
31
1.5
ENST00000360534
5
ENSE00001700120
chr2:
162902122-162902042
81
DPP4_HUMAN
96-122
27
4
A:96-122
B:96-122
C:96-122
D:96-122
27
27
27
27
1.6
ENST00000360534
6
ENSE00001731265
chr2:
162895694-162895642
53
DPP4_HUMAN
123-140
18
4
A:123-140
B:123-140
C:123-140
D:123-140
18
18
18
18
1.7b
ENST00000360534
7b
ENSE00001687658
chr2:
162895531-162895459
73
DPP4_HUMAN
140-164
25
4
A:140-164
B:140-164
C:140-164
D:140-164
25
25
25
25
1.8c
ENST00000360534
8c
ENSE00001752447
chr2:
162894932-162894812
121
DPP4_HUMAN
165-205
41
4
A:165-205
B:165-205
C:165-205
D:165-205
41
41
41
41
1.9
ENST00000360534
9
ENSE00001671980
chr2:
162891834-162891674
161
DPP4_HUMAN
205-258
54
4
A:205-258
B:205-258
C:205-258
D:205-258
54
54
54
54
1.10
ENST00000360534
10
ENSE00001629068
chr2:
162890163-162890051
113
DPP4_HUMAN
259-296
38
4
A:259-296
B:259-296
C:259-296
D:259-296
38
38
38
38
1.12
ENST00000360534
12
ENSE00001774486
chr2:
162881449-162881314
136
DPP4_HUMAN
296-341
46
4
A:296-341
B:296-341
C:296-341
D:296-341
46
46
46
46
1.13
ENST00000360534
13
ENSE00001608277
chr2:
162879309-162879265
45
DPP4_HUMAN
342-356
15
4
A:342-356
B:342-356
C:342-356
D:342-356
15
15
15
15
1.15
ENST00000360534
15
ENSE00001792529
chr2:
162877198-162877091
108
DPP4_HUMAN
357-392
36
4
A:357-392
B:357-392
C:357-392
D:357-392
36
36
36
36
1.16
ENST00000360534
16
ENSE00001609652
chr2:
162876806-162876739
68
DPP4_HUMAN
393-415
23
4
A:393-415
B:393-415
C:393-415
D:393-415
23
23
23
23
1.17
ENST00000360534
17
ENSE00001661516
chr2:
162875786-162875733
54
DPP4_HUMAN
415-433
19
4
A:415-433
B:415-433
C:415-433
D:415-433
19
19
19
19
1.18
ENST00000360534
18
ENSE00001734062
chr2:
162875360-162875239
122
DPP4_HUMAN
433-474
42
4
A:433-474
B:433-474
C:433-474
D:433-474
42
42
42
42
1.20
ENST00000360534
20
ENSE00001689663
chr2:
162873665-162873618
48
DPP4_HUMAN
474-490
17
4
A:474-490
B:474-490
C:474-490
D:474-490
17
17
17
17
1.21b
ENST00000360534
21b
ENSE00001601165
chr2:
162873376-162873278
99
DPP4_HUMAN
490-523
34
4
A:490-523
B:490-523
C:490-523
D:490-523
34
34
34
34
1.22a
ENST00000360534
22a
ENSE00001793185
chr2:
162870975-162870906
70
DPP4_HUMAN
523-546
24
4
A:523-546
B:523-546
C:523-546
D:523-546
24
24
24
24
1.23
ENST00000360534
23
ENSE00001624874
chr2:
162868497-162868303
195
DPP4_HUMAN
546-611
66
4
A:546-611
B:546-611
C:546-611
D:546-611
66
66
66
66
1.24
ENST00000360534
24
ENSE00001805530
chr2:
162865805-162865751
55
DPP4_HUMAN
611-629
19
4
A:611-629
B:611-629
C:611-629
D:611-629
19
19
19
19
1.25
ENST00000360534
25
ENSE00001766271
chr2:
162865171-162865072
100
DPP4_HUMAN
630-663
34
4
A:630-663
B:630-663
C:630-663
D:630-663
34
34
34
34
1.26a
ENST00000360534
26a
ENSE00001658910
chr2:
162862319-162862255
65
DPP4_HUMAN
663-684
22
4
A:663-684
B:663-684
C:663-684
D:663-684
22
22
22
22
1.27a
ENST00000360534
27a
ENSE00001776448
chr2:
162851882-162851810
73
DPP4_HUMAN
685-709
25
4
A:685-709
B:685-709
C:685-709
D:685-709
25
25
25
25
1.28
ENST00000360534
28
ENSE00001768665
chr2:
162851544-162851471
74
DPP4_HUMAN
709-733
25
4
A:709-733
B:709-733
C:709-733
D:709-733
25
25
25
25
1.29b
ENST00000360534
29b
ENSE00001420909
chr2:
162849894-162848751
1144
DPP4_HUMAN
734-766
33
4
A:734-766
B:734-766
C:734-766
D:734-766
33
33
33
33
[
close EXON info
]
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1r9na1 (A:39-508)
1b: SCOP_d1r9nb1 (B:39-508)
1c: SCOP_d1r9nc1 (C:40-508)
1d: SCOP_d1r9nd1 (D:40-508)
2a: SCOP_d1r9na2 (A:509-766)
2b: SCOP_d1r9nb2 (B:509-766)
2c: SCOP_d1r9nc2 (C:509-766)
2d: SCOP_d1r9nd2 (D:509-766)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
8-bladed beta-propeller
(135)
Superfamily
:
DPP6 N-terminal domain-like
(99)
Family
:
DPP6 N-terminal domain-like
(99)
Protein domain
:
Dipeptidyl peptidase IV/CD26, N-terminal domain
(88)
Human (Homo sapiens) [TaxId: 9606]
(80)
1a
d1r9na1
A:39-508
1b
d1r9nb1
B:39-508
1c
d1r9nc1
C:40-508
1d
d1r9nd1
D:40-508
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
DPP6 catalytic domain-like
(63)
Protein domain
:
Dipeptidyl peptidase IV/CD26, C-terminal domain
(62)
Human (Homo sapiens) [TaxId: 9606]
(54)
2a
d1r9na2
A:509-766
2b
d1r9nb2
B:509-766
2c
d1r9nc2
C:509-766
2d
d1r9nd2
D:509-766
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1r9nA02 (A:509-766)
1b: CATH_1r9nB02 (B:509-766)
1c: CATH_1r9nC02 (C:509-766)
1d: CATH_1r9nD02 (D:509-766)
2a: CATH_1r9nC01 (C:40-508)
2b: CATH_1r9nD01 (D:40-508)
2c: CATH_1r9nA01 (A:39-508)
2d: CATH_1r9nB01 (B:36-508)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
1r9nA02
A:509-766
1b
1r9nB02
B:509-766
1c
1r9nC02
C:509-766
1d
1r9nD02
D:509-766
Class
:
Mainly Beta
(13760)
Architecture
:
8 Propellor
(110)
Topology
:
Methanol Dehydrogenase; Chain A
(110)
Homologous Superfamily
:
[code=2.140.10.30, no name defined]
(74)
Human (Homo sapiens)
(59)
2a
1r9nC01
C:40-508
2b
1r9nD01
D:40-508
2c
1r9nA01
A:39-508
2d
1r9nB01
B:36-508
[
close CATH info
]
Pfam Domains
(3, 10)
Info
all PFAM domains
1a: PFAM_Peptidase_S9_1r9nD01 (D:559-765)
1b: PFAM_Peptidase_S9_1r9nD02 (D:559-765)
1c: PFAM_Peptidase_S9_1r9nD03 (D:559-765)
1d: PFAM_Peptidase_S9_1r9nD04 (D:559-765)
2a: PFAM_DPPIV_N_1r9nD05 (D:108-479)
2b: PFAM_DPPIV_N_1r9nD06 (D:108-479)
2c: PFAM_DPPIV_N_1r9nD07 (D:108-479)
2d: PFAM_DPPIV_N_1r9nD08 (D:108-479)
3a: PFAM_Hormone_3_1r9nH01 (H:1001-1005)
3b: PFAM_Hormone_3_1r9nH02 (H:1001-1005)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Peptidase_S9
(57)
Homo sapiens (Human)
(33)
1a
Peptidase_S9-1r9nD01
D:559-765
1b
Peptidase_S9-1r9nD02
D:559-765
1c
Peptidase_S9-1r9nD03
D:559-765
1d
Peptidase_S9-1r9nD04
D:559-765
Clan
:
Beta_propeller
(192)
Family
:
DPPIV_N
(38)
Homo sapiens (Human)
(33)
2a
DPPIV_N-1r9nD05
D:108-479
2b
DPPIV_N-1r9nD06
D:108-479
2c
DPPIV_N-1r9nD07
D:108-479
2d
DPPIV_N-1r9nD08
D:108-479
Clan
:
no clan defined [family: Hormone_3]
(12)
Family
:
Hormone_3
(12)
Macaca mulatta (Rhesus macaque)
(1)
3a
Hormone_3-1r9nH01
H:1001-1005
3b
Hormone_3-1r9nH02
H:1001-1005
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (520 KB)
Header - Asym.Unit
Biol.Unit 1 (261 KB)
Header - Biol.Unit 1
Biol.Unit 2 (255 KB)
Header - Biol.Unit 2
Biol.Unit 3 (255 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1R9N
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help