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1R8S
Biol. Unit 2
Info
Asym.Unit (73 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (130 KB)
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(1)
Title
:
ARF1[DELTA1-17]-GDP IN COMPLEX WITH A SEC7 DOMAIN CARRYING THE MUTATION OF THE CATALYTIC GLUTAMATE TO LYSINE
Authors
:
L. Renault, B. Guibert, J. Cherfils
Date
:
28 Oct 03 (Deposition) - 20 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.46
Chains
:
Asym. Unit : A,E
Biol. Unit 1: A,E (1x)
Biol. Unit 2: A,E (2x)
Keywords
:
Protein Transport/Exchange Factor, Protein Transport-Exchange Factor Complex
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Reference
:
L. Renault, B. Guibert, J. Cherfils
Structural Snapshots Of The Mechanism And Inhibition Of A Guanine Nucleotide Exchange Factor
Nature V. 426 525 2003
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
4a: SULFITE ION (SO3a)
5a: SULFATE ION (SO4a)
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Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
FMT
6
Ligand/Ion
FORMIC ACID
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
SO3
2
Ligand/Ion
SULFITE ION
5
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:538 , GLY E:116 , ARG E:118 , LYS E:156 , GLN E:158 , LYS E:159 , ARG E:162 , HOH E:564
BINDING SITE FOR RESIDUE SO4 E 501
2
AC2
SOFTWARE
ASN A:52 , PRO E:154 , GLY E:155 , LYS E:156
BINDING SITE FOR RESIDUE SO3 E 502
3
AC3
SOFTWARE
ALA A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , ASN A:126 , LYS A:127 , ASP A:129 , LEU A:130 , CYS A:159 , ALA A:160 , HOH A:521 , HOH A:532 , HOH A:538 , HOH A:542 , HOH A:546 , HOH A:550 , HOH A:566 , HOH A:648 , LYS E:156
BINDING SITE FOR RESIDUE GDP A 401
4
AC4
SOFTWARE
ARG A:19 , HOH A:610
BINDING SITE FOR RESIDUE BME A 506
5
AC5
SOFTWARE
ARG A:149 , HIS A:150 , ARG A:151
BINDING SITE FOR RESIDUE FMT A 503
6
AC6
SOFTWARE
ARG A:79
BINDING SITE FOR RESIDUE FMT A 504
7
AC7
SOFTWARE
ASN E:139 , SER E:237
BINDING SITE FOR RESIDUE FMT E 505
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1r8se_ (E:)
2a: SCOP_d1r8sa_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Sec7 domain
(22)
Family
:
Sec7 domain
(14)
Protein domain
:
Exchange factor ARNO
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1r8se_
E:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
ADP-ribosylation factor
(40)
Human (Homo sapiens), ARF1 [TaxId: 9606]
(12)
2a
d1r8sa_
A:
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_1r8sA00 (A:18-177)
2a: CATH_1r8sE01 (E:62-133)
3a: CATH_1r8sE02 (E:134-246)
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)
Homologous Superfamilies
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Cattle (Bos taurus)
(17)
1a
1r8sA00
A:18-177
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.20, no name defined]
(11)
Cattle (Bos taurus)
(3)
2a
1r8sE01
E:62-133
Topology
:
Arf Nucleotide-binding Site Opener; domain 2
(11)
Homologous Superfamily
:
Arf Nucleotide-binding Site Opener,domain 2
(11)
Cattle (Bos taurus)
(3)
3a
1r8sE02
E:134-246
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Arf_1r8sA01 (A:18-177)
2a: PFAM_Sec7_1r8sE01 (E:62-243)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Arf
(26)
Bos taurus (Bovine)
(3)
1a
Arf-1r8sA01
A:18-177
Clan
:
no clan defined [family: Sec7]
(12)
Family
:
Sec7
(12)
Homo sapiens (Human)
(7)
2a
Sec7-1r8sE01
E:62-243
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Asym.Unit (73 KB)
Header - Asym.Unit
Biol.Unit 1 (66 KB)
Header - Biol.Unit 1
Biol.Unit 2 (130 KB)
Header - Biol.Unit 2
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