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1R8Q
Biol. Unit 6
Info
Asym.Unit (141 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
Biol.Unit 3 (132 KB)
Biol.Unit 4 (132 KB)
Biol.Unit 5 (133 KB)
Biol.Unit 6 (132 KB)
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(1)
Title
:
FULL-LENGTH ARF1-GDP-MG IN COMPLEX WITH BREFELDIN A AND A SEC7 DOMAIN
Authors
:
L. Renault, B. Guibert, J. Cherfils
Date
:
28 Oct 03 (Deposition) - 20 Jan 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.86
Chains
:
Asym. Unit : A,B,E,F
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: A,B,E,F (1x)
Biol. Unit 4: A,B,E,F (1x)
Biol. Unit 5: A,B,E,F (1x)
Biol. Unit 6: A,B,E,F (1x)
Keywords
:
Protein Transport/Exchange Factor, Protein Transport-Exchange Factor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Renault, B. Guibert, J. Cherfils
Structural Snapshots Of The Mechanism And Inhibition Of A Guanine Nucleotide Exchange Factor
Nature V. 426 525 2003
[
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]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1,6,7,8,9,11A,12,13,14,14A-DECAHYD... (AFBa)
1b: 1,6,7,8,9,11A,12,13,14,14A-DECAHYD... (AFBb)
2a: GUANOSINE-3'-MONOPHOSPHATE-5'-DIPH... (G3Da)
2b: GUANOSINE-3'-MONOPHOSPHATE-5'-DIPH... (G3Db)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AFB
1
Ligand/Ion
1,6,7,8,9,11A,12,13,14,14A-DECAHYDRO-1,13-DIHYDROXY-6-METHYL-4H-CYCLOPENT[F]OXACYCLOTRIDECIN-4-ONE
2
G3D
1
Ligand/Ion
GUANOSINE-3'-MONOPHOSPHATE-5'-DIPHOSPHATE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:31 , G3D A:401 , HOH A:410 , HOH A:450 , HOH A:504 , HOH A:510
BINDING SITE FOR RESIDUE MG A 402
2
AC2
SOFTWARE
THR B:31 , G3D B:501 , HOH B:517 , HOH B:563 , HOH B:567 , HOH B:570
BINDING SITE FOR RESIDUE MG B 502
3
AC3
SOFTWARE
HIS E:127 , ASP E:131 , HIS F:127 , ASP F:131
BINDING SITE FOR RESIDUE ZN E 601
4
AC4
SOFTWARE
ALA A:27 , ALA A:28 , GLY A:29 , LYS A:30 , THR A:31 , THR A:32 , ASN A:126 , LYS A:127 , ASP A:129 , LEU A:130 , CYS A:159 , ALA A:160 , THR A:161 , MG A:402 , HOH A:410 , HOH A:432 , HOH A:435 , HOH A:445 , HOH A:504 , HOH A:510 , LYS B:142
BINDING SITE FOR RESIDUE G3D A 401
5
AC5
SOFTWARE
VAL A:53 , THR A:64 , VAL A:65 , TRP A:66 , ASP A:67 , TRP A:78 , TYR A:81 , HOH A:406 , HOH A:414 , TYR E:190 , MET E:194
BINDING SITE FOR RESIDUE AFB A 403
6
AC6
SOFTWARE
LYS A:142 , ALA B:27 , ALA B:28 , GLY B:29 , LYS B:30 , THR B:31 , THR B:32 , ASN B:126 , LYS B:127 , ASP B:129 , LEU B:130 , CYS B:159 , ALA B:160 , THR B:161 , MG B:502 , HOH B:563 , HOH B:567 , HOH B:569 , HOH B:570
BINDING SITE FOR RESIDUE G3D B 501
7
AC7
SOFTWARE
VAL B:53 , THR B:64 , VAL B:65 , TRP B:66 , ASP B:67 , TRP B:78 , TYR B:81 , HOH B:506 , HOH B:508 , HOH B:513 , TYR F:190 , MET F:194 , THR F:197
BINDING SITE FOR RESIDUE AFB B 503
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ARF (A:11-177,B:11-177)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARF
PS51417
small GTPase Arf family profile.
ARF1_BOVIN
11-177
2
A:11-177
B:11-177
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1r8qe_ (E:)
1b: SCOP_d1r8qf_ (F:)
2a: SCOP_d1r8qa_ (A:)
2b: SCOP_d1r8qb_ (B:)
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)
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)
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(
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Sec7 domain
(22)
Family
:
Sec7 domain
(14)
Protein domain
:
Exchange factor ARNO
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d1r8qe_
E:
1b
d1r8qf_
F:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
ADP-ribosylation factor
(40)
Human (Homo sapiens), ARF1 [TaxId: 9606]
(12)
2a
d1r8qa_
A:
2b
d1r8qb_
B:
[
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CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1r8qA00 (A:2-180)
1b: CATH_1r8qB00 (B:2-180)
2a: CATH_1r8qE01 (E:56-133)
2b: CATH_1r8qF01 (F:56-133)
3a: CATH_1r8qE02 (E:134-246)
3b: CATH_1r8qF02 (F:134-246)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Cattle (Bos taurus)
(17)
1a
1r8qA00
A:2-180
1b
1r8qB00
B:2-180
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Annexin V; domain 1
(80)
Homologous Superfamily
:
[code=1.10.220.20, no name defined]
(11)
Cattle (Bos taurus)
(3)
2a
1r8qE01
E:56-133
2b
1r8qF01
F:56-133
Topology
:
Arf Nucleotide-binding Site Opener; domain 2
(11)
Homologous Superfamily
:
Arf Nucleotide-binding Site Opener,domain 2
(11)
Cattle (Bos taurus)
(3)
3a
1r8qE02
E:134-246
3b
1r8qF02
F:134-246
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Arf_1r8qB01 (B:3-177)
1b: PFAM_Arf_1r8qB02 (B:3-177)
2a: PFAM_Sec7_1r8qF01 (F:58-243)
2b: PFAM_Sec7_1r8qF02 (F:58-243)
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Clans
(
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(
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Arf
(26)
Bos taurus (Bovine)
(3)
1a
Arf-1r8qB01
B:3-177
1b
Arf-1r8qB02
B:3-177
Clan
:
no clan defined [family: Sec7]
(12)
Family
:
Sec7
(12)
Homo sapiens (Human)
(7)
2a
Sec7-1r8qF01
F:58-243
2b
Sec7-1r8qF02
F:58-243
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Chain E
Chain F
Asymmetric Unit 1
Asymmetric Unit 2
Asymmetric Unit 3
Asymmetric Unit 4
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Asym.Unit (141 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
Biol.Unit 3 (132 KB)
Header - Biol.Unit 3
Biol.Unit 4 (132 KB)
Header - Biol.Unit 4
Biol.Unit 5 (133 KB)
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Biol.Unit 6 (132 KB)
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