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1R8H
Asym. Unit
Info
Asym.Unit (111 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (39 KB)
Biol.Unit 4 (105 KB)
Biol.Unit 5 (36 KB)
Biol.Unit 6 (37 KB)
Biol.Unit 7 (37 KB)
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(1)
Title
:
COMPARISON OF THE STRUCTURE AND DNA BINDING PROPERTIES OF THE E2 PROTEINS FROM AN ONCOGENIC AND A NON-ONCOGENIC HUMAN PAPILLOMAVIRUS
Authors
:
G. Dell, K. W. Wilkinson, R. Tranter, J. Parish, R. L. Brady, K. Gaston
Date
:
24 Oct 03 (Deposition) - 23 Dec 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,E (1x)
Biol. Unit 3: C,F (1x)
Biol. Unit 4: A,B,C,D,E,F (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: E,F (1x)
Biol. Unit 7: C,D (1x)
Keywords
:
Anti-Parallel Beta-Barrel, Dna-Binding Domain, Transcription, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Dell, K. W. Wilkinson, R. Tranter, J. Parish, R. Leo Brady, K. Gaston
Comparison Of The Structure And Dna-Binding Properties Of The E2 Proteins From An Oncogenic And A Non-Oncogenic Human Papillomavirus.
J. Mol. Biol. V. 334 979 2003
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 14)
Info
All Hetero Components
1a: PHOSPHATE ION (PO4a)
1b: PHOSPHATE ION (PO4b)
1c: PHOSPHATE ION (PO4c)
1d: PHOSPHATE ION (PO4d)
1e: PHOSPHATE ION (PO4e)
1f: PHOSPHATE ION (PO4f)
1g: PHOSPHATE ION (PO4g)
1h: PHOSPHATE ION (PO4h)
1i: PHOSPHATE ION (PO4i)
1j: PHOSPHATE ION (PO4j)
1k: PHOSPHATE ION (PO4k)
1l: PHOSPHATE ION (PO4l)
1m: PHOSPHATE ION (PO4m)
1n: PHOSPHATE ION (PO4n)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PO4
14
Ligand/Ion
PHOSPHATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS D:318 , SER D:321 , LYS D:327
BINDING SITE FOR RESIDUE PO4 D 501
02
AC2
SOFTWARE
HIS E:318 , ALA E:320 , SER E:321 , LYS E:327 , HOH E:570
BINDING SITE FOR RESIDUE PO4 E 502
03
AC3
SOFTWARE
ARG D:302 , HIS D:306 , LYS D:349 , HOH D:528 , HOH D:531
BINDING SITE FOR RESIDUE PO4 D 503
04
AC4
SOFTWARE
SER D:315 , THR D:316 , HOH D:544
BINDING SITE FOR RESIDUE PO4 D 504
05
AC5
SOFTWARE
ARG E:302 , HIS E:306 , LYS E:349 , HOH E:549 , HOH E:567
BINDING SITE FOR RESIDUE PO4 E 505
06
AC6
SOFTWARE
LYS E:297 , ARG E:300 , SER E:315 , THR E:316 , HOH E:545
BINDING SITE FOR RESIDUE PO4 E 506
07
AC7
SOFTWARE
LYS F:297 , ARG F:300 , SER F:315 , THR F:316 , HOH F:541
BINDING SITE FOR RESIDUE PO4 F 507
08
AC8
SOFTWARE
ARG A:302 , HIS A:306 , LYS A:349 , HOH A:569
BINDING SITE FOR RESIDUE PO4 A 508
09
AC9
SOFTWARE
LYS B:297 , ARG B:300 , SER B:315 , THR B:316 , HOH B:541
BINDING SITE FOR RESIDUE PO4 B 509
10
BC1
SOFTWARE
ARG A:300 , SER A:315 , THR A:316 , HOH A:563
BINDING SITE FOR RESIDUE PO4 A 510
11
BC2
SOFTWARE
ARG B:302 , HIS B:306 , LYS B:349
BINDING SITE FOR RESIDUE PO4 B 511
12
BC3
SOFTWARE
LYS C:297 , ARG C:300 , SER C:315 , THR C:316 , HOH C:551
BINDING SITE FOR RESIDUE PO4 C 512
13
BC4
SOFTWARE
ARG F:302 , HIS F:306 , LYS F:349 , HOH F:537
BINDING SITE FOR RESIDUE PO4 F 513
14
BC5
SOFTWARE
ARG C:302 , LYS C:305 , HIS C:306 , LYS C:349
BINDING SITE FOR RESIDUE PO4 C 514
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1r8ha_ (A:)
1b: SCOP_d1r8hb_ (B:)
1c: SCOP_d1r8hc_ (C:)
1d: SCOP_d1r8hd_ (D:)
1e: SCOP_d1r8he_ (E:)
1f: SCOP_d1r8hf_ (F:)
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(
)
(
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)
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)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Viral DNA-binding domain
(18)
Family
:
Viral DNA-binding domain
(18)
Protein domain
:
Papillomavirus-1 E2 protein
(16)
Human papillomavirus type 6a [TaxId: 37122]
(4)
1a
d1r8ha_
A:
1b
d1r8hb_
B:
1c
d1r8hc_
C:
1d
d1r8hd_
D:
1e
d1r8he_
E:
1f
d1r8hf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1r8hA00 (A:281-366)
1b: CATH_1r8hB00 (B:281-366)
1c: CATH_1r8hD00 (D:281-366)
1d: CATH_1r8hE00 (E:281-366)
1e: CATH_1r8hC00 (C:281-366)
1f: CATH_1r8hF00 (F:281-366)
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(
)
(
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human papillomavirus type 6a. Organism_taxid: 37122.
(2)
1a
1r8hA00
A:281-366
1b
1r8hB00
B:281-366
1c
1r8hD00
D:281-366
1d
1r8hE00
E:281-366
1e
1r8hC00
C:281-366
1f
1r8hF00
F:281-366
[
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]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_PPV_E2_C_1r8hF01 (F:285-362)
1b: PFAM_PPV_E2_C_1r8hF02 (F:285-362)
1c: PFAM_PPV_E2_C_1r8hF03 (F:285-362)
1d: PFAM_PPV_E2_C_1r8hF04 (F:285-362)
1e: PFAM_PPV_E2_C_1r8hF05 (F:285-362)
1f: PFAM_PPV_E2_C_1r8hF06 (F:285-362)
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Clans
(
)
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)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: PPV_E2_C]
(7)
Family
:
PPV_E2_C
(7)
Human papillomavirus type 6a
(1)
1a
PPV_E2_C-1r8hF01
F:285-362
1b
PPV_E2_C-1r8hF02
F:285-362
1c
PPV_E2_C-1r8hF03
F:285-362
1d
PPV_E2_C-1r8hF04
F:285-362
1e
PPV_E2_C-1r8hF05
F:285-362
1f
PPV_E2_C-1r8hF06
F:285-362
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Chain F
Asymmetric Unit 1
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Asym.Unit (111 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (39 KB)
Header - Biol.Unit 3
Biol.Unit 4 (105 KB)
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Biol.Unit 5 (36 KB)
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Biol.Unit 6 (37 KB)
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