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1R86
Asym. Unit
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Asym.Unit (77 KB)
Biol.Unit 1 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXTRACELLULAR XYLANASE FROM GEOBACILLUS STEAROTHERMOPHILUS T-6 (XT6, MONOCLINIC FORM): THE E159A/E265A MUTANT AT 1.8A RESOLUTION
Authors
:
M. Bar, G. Golan, G. Zolotnitsky, Y. Shoham, G. Shoham
Date
:
23 Oct 03 (Deposition) - 19 Jul 05 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Bar, G. Golan, G. Zolotnitsky, Y. Shoham, G. Shoham
Crystal Structure Of The Extracellular Xylanase From Geobacillus Stearothermophilus T-6 (Xt6, Monoclinic Form): The E159A/E265A Mutant At 1. 8A Resolution
To Be Published
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Hetero Components
(3, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: SULFATE ION (SO4a)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
SO4
1
Ligand/Ion
SULFATE ION
3
ZN
7
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:11 , GLU A:27 , ASP A:365 , CL A:701
BINDING SITE FOR RESIDUE ZN A 901
02
AC2
SOFTWARE
ASP A:21 , HOH A:1001 , HOH A:1162 , HOH A:1163 , HOH A:1164 , HOH A:1165
BINDING SITE FOR RESIDUE ZN A 902
03
AC3
SOFTWARE
ASP A:282 , HIS A:378 , HOH A:1232 , HOH A:1298 , HOH A:1299
BINDING SITE FOR RESIDUE ZN A 903
04
AC4
SOFTWARE
ASP A:282 , HIS A:378 , HOH A:1274 , HOH A:1303 , HOH A:1347
BINDING SITE FOR RESIDUE ZN A 904
05
AC5
SOFTWARE
GLU A:58 , HIS A:322 , CL A:702 , HOH A:1099
BINDING SITE FOR RESIDUE ZN A 905
06
AC6
SOFTWARE
GLU A:27 , SER A:307 , ILE A:310 , HOH A:1066 , HOH A:1231 , HOH A:1233
BINDING SITE FOR RESIDUE ZN A 906
07
AC7
SOFTWARE
ASP A:297 , ALA A:374 , ASP A:377 , LYS A:379 , HOH A:1018 , HOH A:1297 , HOH A:1331
BINDING SITE FOR RESIDUE ZN A 907
08
AC8
SOFTWARE
HIS A:11 , ASN A:26 , GLU A:27 , ASP A:365 , ZN A:901 , HOH A:1274
BINDING SITE FOR RESIDUE CL A 701
09
AC9
SOFTWARE
GLU A:58 , HIS A:322 , TRP A:324 , ZN A:905 , HOH A:1071
BINDING SITE FOR RESIDUE CL A 702
10
BC1
SOFTWARE
ASP A:377 , HIS A:378 , LYS A:379
BINDING SITE FOR RESIDUE SO4 A 802
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GH10_2 (A:14-378)
2: GH10_1 (A:258-268)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH10_2
PS51760
Glycosyl hydrolases family 10 (GH10) domain profile.
XYN1_GEOSE
42-406
1
A:14-378
2
GH10_1
PS00591
Glycosyl hydrolases family 10 (GH10) active site.
XYN1_GEOSE
286-296
1
A:258-268
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1r86a1 (A:9-379)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase
(19)
Bacillus stearothermophilus, Xt6 [TaxId: 1422]
(5)
1a
d1r86a1
A:9-379
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1r86A00 (A:9-379)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(6)
1a
1r86A00
A:9-379
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_10_1r86A01 (A:19-379)
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Clans
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Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_10
(42)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(11)
1a
Glyco_hydro_10-1r86A01
A:19-379
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Chain A
Asymmetric Unit 1
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