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1R85
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXTRACELLULAR XYLANASE FROM GEOBACILLUS STEAROTHERMOPHILUS T-6 (XT6): THE WT ENZYME (MONOCLINIC FORM) AT 1.45A RESOLUTION
Authors
:
M. Bar, G. Golan, M. Nechama, G. Zolotnitsky, Y. Shoham, G. Shoham
Date
:
23 Oct 03 (Deposition) - 20 Jul 04 (Release) - 30 Apr 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Zolotnitsky, U. Cogan, N. Adir, V. Solomon, G. Shoham, Y. Shoham
Mapping Glycoside Hydrolase Substrate Subsites By Isotherma Titration Calorimetry.
Proc. Natl. Acad. Sci. Usa V. 101 11275 2004
[
close entry info
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Hetero Components
(4, 31)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
GOL
19
Ligand/Ion
GLYCEROL
3
SO4
3
Ligand/Ion
SULFATE ION
4
ZN
7
Ligand/Ion
ZINC ION
[
close Hetero Component info
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:11 , GLU A:27 , ASP A:365 , CL A:701
BINDING SITE FOR RESIDUE ZN A 901
02
AC2
SOFTWARE
ASP A:21 , HOH A:1212 , HOH A:1213 , HOH A:1214 , HOH A:1215 , HOH A:1216
BINDING SITE FOR RESIDUE ZN A 902
03
AC3
SOFTWARE
ASP A:282 , HIS A:378 , HOH A:1181 , HOH A:1205 , HOH A:1291
BINDING SITE FOR RESIDUE ZN A 903
04
AC4
SOFTWARE
GLU A:58 , HIS A:322 , CL A:702 , HOH A:1020
BINDING SITE FOR RESIDUE ZN A 904
05
AC5
SOFTWARE
GLU A:27 , SER A:307 , ILE A:310 , GOL A:510 , HOH A:1108
BINDING SITE FOR RESIDUE ZN A 905
06
AC6
SOFTWARE
ASP A:297 , ALA A:374 , ASP A:377 , LYS A:379 , HOH A:1021 , HOH A:1049 , HOH A:1111
BINDING SITE FOR RESIDUE ZN A 906
07
AC7
SOFTWARE
ASP A:282 , HIS A:378 , GOL A:518 , HOH A:1056 , HOH A:1506
BINDING SITE FOR RESIDUE ZN A 907
08
AC8
SOFTWARE
HIS A:11 , ASN A:26 , GLU A:27 , ASP A:365 , GOL A:518 , ZN A:901
BINDING SITE FOR RESIDUE CL A 701
09
AC9
SOFTWARE
GLU A:58 , HIS A:322 , TRP A:324 , GOL A:513 , ZN A:904
BINDING SITE FOR RESIDUE CL A 702
10
BC1
SOFTWARE
LYS A:25 , PRO A:285 , LYS A:286 , GOL A:501 , HOH A:1380 , HOH A:1435
BINDING SITE FOR RESIDUE SO4 A 801
11
BC2
SOFTWARE
ASP A:377 , HIS A:378
BINDING SITE FOR RESIDUE SO4 A 802
12
BC3
SOFTWARE
GLY A:89 , ASP A:91 , GOL A:519 , HOH A:1092 , HOH A:1146 , HOH A:1207
BINDING SITE FOR RESIDUE SO4 A 803
13
BC4
SOFTWARE
GLN A:22 , LYS A:25 , ASN A:53 , GOL A:519 , SO4 A:801 , HOH A:1215 , HOH A:1216 , HOH A:1339
BINDING SITE FOR RESIDUE GOL A 501
14
BC5
SOFTWARE
GLN A:19 , ARG A:50 , PRO A:279 , HOH A:1079 , HOH A:1194 , HOH A:1240 , HOH A:1320 , HOH A:1424
BINDING SITE FOR RESIDUE GOL A 502
15
BC6
SOFTWARE
ARG A:328 , ASP A:330 , GOL A:505 , HOH A:1054 , HOH A:1225 , HOH A:1423
BINDING SITE FOR RESIDUE GOL A 503
16
BC7
SOFTWARE
LYS A:148 , ASP A:149 , ASP A:150 , LYS A:152
BINDING SITE FOR RESIDUE GOL A 504
17
BC8
SOFTWARE
PRO A:274 , TYR A:332 , ASN A:344 , LYS A:352 , GOL A:503
BINDING SITE FOR RESIDUE GOL A 505
18
BC9
SOFTWARE
ASN A:204 , TRP A:241 , TRP A:273 , GOL A:508 , HOH A:1247 , HOH A:1329
BINDING SITE FOR RESIDUE GOL A 506
19
CC1
SOFTWARE
TYR A:333 , GLY A:337 , LYS A:349 , GLU A:351 , HOH A:1447
BINDING SITE FOR RESIDUE GOL A 507
20
CC2
SOFTWARE
HIS A:236 , TRP A:324 , ARG A:328 , GOL A:506 , HOH A:1058 , HOH A:1268 , HOH A:1419
BINDING SITE FOR RESIDUE GOL A 508
21
CC3
SOFTWARE
GLY A:165 , LYS A:166 , LEU A:167 , HOH A:1186 , HOH A:1369
BINDING SITE FOR RESIDUE GOL A 509
22
CC4
SOFTWARE
GLU A:27 , SER A:307 , ILE A:310 , SER A:311 , ZN A:905 , HOH A:1102 , HOH A:1131 , HOH A:1259 , HOH A:1352
BINDING SITE FOR RESIDUE GOL A 510
23
CC5
SOFTWARE
LYS A:62 , GLN A:234 , GLU A:265 , TRP A:316 , TRP A:324 , HOH A:1072 , HOH A:1252 , HOH A:1381 , HOH A:1418 , HOH A:1419 , HOH A:1501
BINDING SITE FOR RESIDUE GOL A 511
24
CC6
SOFTWARE
LEU A:133 , LYS A:134 , GLU A:137 , VAL A:183 , HOH A:1144 , HOH A:1410
BINDING SITE FOR RESIDUE GOL A 512
25
CC7
SOFTWARE
HIS A:322 , THR A:323 , ASP A:326 , CL A:702 , HOH A:1261 , HOH A:1305
BINDING SITE FOR RESIDUE GOL A 513
26
CC8
SOFTWARE
GLU A:70 , ASP A:79 , HOH A:1091 , HOH A:1142 , HOH A:1183 , HOH A:1234 , HOH A:1244
BINDING SITE FOR RESIDUE GOL A 514
27
CC9
SOFTWARE
LYS A:49 , ASN A:88 , HOH A:1034 , HOH A:1063 , HOH A:1214 , HOH A:1302
BINDING SITE FOR RESIDUE GOL A 515
28
DC1
SOFTWARE
GLU A:70 , LYS A:111 , LEU A:131 , ARG A:135 , HOH A:1226 , HOH A:1244 , HOH A:1338 , HOH A:1351
BINDING SITE FOR RESIDUE GOL A 516
29
DC2
SOFTWARE
GLY A:162 , ASP A:163 , ASP A:164 , ARG A:168 , HOH A:1374 , HOH A:1482
BINDING SITE FOR RESIDUE GOL A 517
30
DC3
SOFTWARE
ARG A:23 , GLU A:27 , TYR A:281 , ASP A:282 , GLU A:304 , PRO A:364 , ASP A:365 , HIS A:378 , CL A:701 , ZN A:907 , HOH A:1056 , HOH A:1506
BINDING SITE FOR RESIDUE GOL A 518
31
DC4
SOFTWARE
ASN A:53 , GLY A:89 , ASP A:91 , GOL A:501 , SO4 A:803 , HOH A:1176
BINDING SITE FOR RESIDUE GOL A 519
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: GH10_2 (A:14-378)
2: GH10_1 (A:258-268)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GH10_2
PS51760
Glycosyl hydrolases family 10 (GH10) domain profile.
XYN1_GEOSE
42-406
1
A:14-378
2
GH10_1
PS00591
Glycosyl hydrolases family 10 (GH10) active site.
XYN1_GEOSE
286-296
1
A:258-268
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1r85a_ (A:)
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Classes
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Folds
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
beta-glycanases
(284)
Protein domain
:
Xylanase
(19)
Bacillus stearothermophilus, Xt6 [TaxId: 1422]
(5)
1a
d1r85a_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1r85A00 (A:9-379)
View:
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Geobacillus stearothermophilus. Organism_taxid: 1422.
(6)
1a
1r85A00
A:9-379
[
close CATH info
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Glyco_hydro_10_1r85A01 (A:19-379)
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Clans
(
)
(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
Glyco_hydro_tim
(488)
Family
:
Glyco_hydro_10
(42)
Geobacillus stearothermophilus (Bacillus stearothermophilus)
(11)
1a
Glyco_hydro_10-1r85A01
A:19-379
[
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]
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