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1R7R
Biol. Unit 1
Info
Asym.Unit (99 KB)
Biol.Unit 1 (521 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF MURINE P97/VCP AT 3.6A
Authors
:
T. Huyton, V. E. Pye, L. C. Briggs, T. C. Flynn, F. Beuron, H. Kondo, J. Ma, P. S. Freemont
Date
:
22 Oct 03 (Deposition) - 16 Dec 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
P97, Vcp, Aaa, Cdc48, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Huyton, V. E. Pye, L. C. Briggs, T. C. Flynn, F. Beuron, H. Kondo, J. Ma X. Zhang, P. S. Freemont
The Crystal Structure Of Murine P97/Vcp At 3. 6A
J. Struct. Biol. V. 144 337 2003
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
6
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:205 , VAL A:206 , GLY A:207 , GLY A:248 , THR A:249 , GLY A:250 , THR A:252 , LEU A:253 , ARG A:359 , HIS A:384 , GLY A:408 , ALA A:409
BINDING SITE FOR RESIDUE ADP A 817
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: AAA (A:617-635)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AAA
PS00674
AAA-protein family signature.
TERA_MOUSE
341-359
617-635
12
A:341-359
A:617-635
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 4)
Info
All SCOP Domains
1a: SCOP_d1r7ra1 (A:17-106)
2a: SCOP_d1r7ra4 (A:107-200)
3a: SCOP_d1r7ra2 (A:201-470)
3b: SCOP_d1r7ra3 (A:471-735)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Double psi beta-barrel
(111)
Superfamily
:
ADC-like
(88)
Family
:
Cdc48 N-terminal domain-like
(16)
Protein domain
:
Membrane fusion ATPase p97 N-terminal domain , P97-Nn
(10)
Mouse (Mus musculus) [TaxId: 10090]
(5)
1a
d1r7ra1
A:17-106
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cdc48 domain 2-like
(22)
Superfamily
:
Cdc48 domain 2-like
(22)
Family
:
Cdc48 domain 2-like
(16)
Protein domain
:
Membrane fusion atpase p97 domain 2, P97-Nc
(10)
Mouse (Mus musculus) [TaxId: 10090]
(5)
2a
d1r7ra4
A:107-200
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
Membrane fusion ATPase VCP/p97
(4)
Mouse (Mus musculus) [TaxId: 10090]
(4)
3a
d1r7ra2
A:201-470
3b
d1r7ra3
A:471-735
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CATH Domains
(4, 6)
Info
all CATH domains
1a: CATH_1r7rA03 (A:192-371)
1b: CATH_1r7rA05 (A:465-649)
2a: CATH_1r7rA02 (A:109-191)
3a: CATH_1r7rA04 (A:372-464)
3b: CATH_1r7rA06 (A:650-735)
4a: CATH_1r7rA01 (A:17-108)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
House mouse (Mus musculus)
(47)
1a
1r7rA03
A:192-371
1b
1r7rA05
A:465-649
Architecture
:
Roll
(3276)
Topology
:
Vcp-like ATPase; Chain A, domain 2
(12)
Homologous Superfamily
:
[code=3.10.330.10, no name defined]
(10)
House mouse (Mus musculus)
(5)
2a
1r7rA02
A:109-191
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.60, no name defined]
(73)
House mouse (Mus musculus)
(4)
3a
1r7rA04
A:372-464
3b
1r7rA06
A:650-735
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Barwin-like endoglucanases
(75)
Homologous Superfamily
:
[code=2.40.40.20, no name defined]
(63)
House mouse (Mus musculus)
(5)
4a
1r7rA01
A:17-108
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Pfam Domains
(4, 5)
Info
all PFAM domains
1a: PFAM_CDC48_2_1r7rA01 (A:125-191)
2a: PFAM_AAA_1r7rA02 (A:514-647)
2b: PFAM_AAA_1r7rA03 (A:514-647)
3a: PFAM_CDC48_N_1r7rA04 (A:25-108)
4a: PFAM_Vps4_C_1r7rA05 (A:727-735)
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)
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)
Clan
:
Cdc48_2-like
(11)
Family
:
CDC48_2
(8)
Mus musculus (Mouse)
(3)
1a
CDC48_2-1r7rA01
A:125-191
Clan
:
P-loop_NTPase
(1112)
Family
:
AAA
(26)
Mus musculus (Mouse)
(5)
2a
AAA-1r7rA02
A:514-647
2b
AAA-1r7rA03
A:514-647
Clan
:
no clan defined [family: CDC48_N]
(7)
Family
:
CDC48_N
(7)
Mus musculus (Mouse)
(3)
3a
CDC48_N-1r7rA04
A:25-108
Clan
:
no clan defined [family: Vps4_C]
(9)
Family
:
Vps4_C
(9)
Mus musculus (Mouse)
(4)
4a
Vps4_C-1r7rA05
A:727-735
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Asym.Unit (99 KB)
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Biol.Unit 1 (521 KB)
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