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1R79
Asym. Unit
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Asym.Unit (410 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE C1 DOMAIN OF THE HUMAN DIACYLGLYCEROL KINASE DELTA
Authors
:
K. Miyamoto, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
21 Oct 03 (Deposition) - 21 Apr 04 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
C1 Domain, Cystein-Rich Zinc Binding Domain, Diacylglycerol Kinase Delta, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Miyamoto, T. Tomizawa, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The C1 Domain Of The Human Diacylglycerol Kinase Delta
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:28 , CYS A:59 , CYS A:62 , CYS A:78
BINDING SITE FOR RESIDUE ZN A 201
2
AC2
SOFTWARE
CYS A:41 , CYS A:44 , HIS A:67 , CYS A:70
BINDING SITE FOR RESIDUE ZN A 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ZF_DAG_PE_2 (-|A:27-78)
2: ZF_DAG_PE_1 (-|A:28-78)
3: DAGK (A:79-84)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_DAG_PE_2
PS50081
Zinc finger phorbol-ester/DAG-type profile.
DGKD_HUMAN
163-213
235-286
1
-
A:27-78
2
ZF_DAG_PE_1
PS00479
Zinc finger phorbol-ester/DAG-type signature.
DGKD_HUMAN
164-213
236-286
1
-
A:28-78
3
DAGK
PS50146
DAG-kinase catalytic (DAGKc) domain profile.
DGKD_HUMAN
317-451
1
A:79-84
[
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Exons
(4, 4)
Info
All Exons
Exon 1.10b (A:1-23)
Exon 1.11 (A:24-65)
Exon 1.12 (A:66-78)
Exon 1.13a (A:79-84)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.9b/1.10b
2: Boundary 1.10b/1.11
3: Boundary 1.11/1.12
4: Boundary 1.12/1.13a
5: Boundary 1.13a/1.14a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000264057
1a
ENSE00001123844
chr2:
234263153-234263320
168
DGKD_HUMAN
1-52
52
0
-
-
1.4b
ENST00000264057
4b
ENSE00001656899
chr2:
234296903-234297013
111
DGKD_HUMAN
53-89
37
0
-
-
1.5
ENST00000264057
5
ENSE00001663062
chr2:
234299049-234299129
81
DGKD_HUMAN
90-116
27
0
-
-
1.8a
ENST00000264057
8a
ENSE00000403200
chr2:
234343026-234343130
105
DGKD_HUMAN
117-151
35
0
-
-
1.9b
ENST00000264057
9b
ENSE00000786932
chr2:
234343415-234343547
133
DGKD_HUMAN
152-196
45
0
-
-
1.10b
ENST00000264057
10b
ENSE00000786931
chr2:
234344464-234344570
107
DGKD_HUMAN
196-231
36
1
A:1-23
23
1.11
ENST00000264057
11
ENSE00000786930
chr2:
234344962-234345087
126
DGKD_HUMAN
232-273
42
1
A:24-65
42
1.12
ENST00000264057
12
ENSE00000403204
chr2:
234346023-234346125
103
DGKD_HUMAN
274-308
35
1
A:66-78
13
1.13a
ENST00000264057
13a
ENSE00000786928
chr2:
234346863-234347025
163
DGKD_HUMAN
308-362
55
1
A:79-84
6
1.14a
ENST00000264057
14a
ENSE00000786927
chr2:
234350533-234350641
109
DGKD_HUMAN
362-398
37
0
-
-
1.15
ENST00000264057
15
ENSE00000403207
chr2:
234354269-234354408
140
DGKD_HUMAN
399-445
47
0
-
-
1.16
ENST00000264057
16
ENSE00000786925
chr2:
234355358-234355442
85
DGKD_HUMAN
445-473
29
0
-
-
1.18b
ENST00000264057
18b
ENSE00000403209
chr2:
234356733-234356827
95
DGKD_HUMAN
474-505
32
0
-
-
1.19
ENST00000264057
19
ENSE00000403210
chr2:
234356922-234357021
100
DGKD_HUMAN
505-538
34
0
-
-
1.20c
ENST00000264057
20c
ENSE00000403211
chr2:
234357749-234358022
274
DGKD_HUMAN
539-630
92
0
-
-
1.21
ENST00000264057
21
ENSE00000403212
chr2:
234358628-234358777
150
DGKD_HUMAN
630-680
51
0
-
-
1.22
ENST00000264057
22
ENSE00000786920
chr2:
234359568-234359696
129
DGKD_HUMAN
680-723
44
0
-
-
1.23
ENST00000264057
23
ENSE00000403214
chr2:
234360610-234360706
97
DGKD_HUMAN
723-755
33
0
-
-
1.25
ENST00000264057
25
ENSE00002197667
chr2:
234363409-234363519
111
DGKD_HUMAN
755-792
38
0
-
-
1.26
ENST00000264057
26
ENSE00001711050
chr2:
234365545-234365641
97
DGKD_HUMAN
792-824
33
0
-
-
1.27a
ENST00000264057
27a
ENSE00001780674
chr2:
234365867-234365974
108
DGKD_HUMAN
825-860
36
0
-
-
1.28b
ENST00000264057
28b
ENSE00001677254
chr2:
234366930-234367043
114
DGKD_HUMAN
861-898
38
0
-
-
1.29b
ENST00000264057
29b
ENSE00001758296
chr2:
234368403-234368537
135
DGKD_HUMAN
899-943
45
0
-
-
1.30
ENST00000264057
30
ENSE00001604181
chr2:
234368840-234368991
152
DGKD_HUMAN
944-994
51
0
-
-
1.31
ENST00000264057
31
ENSE00001593353
chr2:
234370994-234371105
112
DGKD_HUMAN
994-1031
38
0
-
-
1.32
ENST00000264057
32
ENSE00001681592
chr2:
234371289-234371381
93
DGKD_HUMAN
1032-1062
31
0
-
-
1.33b
ENST00000264057
33b
ENSE00001695731
chr2:
234372810-234372929
120
DGKD_HUMAN
1063-1102
40
0
-
-
1.34b
ENST00000264057
34b
ENSE00001756067
chr2:
234375732-234375849
118
DGKD_HUMAN
1103-1142
40
0
-
-
1.35
ENST00000264057
35
ENSE00001737904
chr2:
234377069-234377199
131
DGKD_HUMAN
1142-1185
44
0
-
-
1.36b
ENST00000264057
36b
ENSE00001923484
chr2:
234378017-234380746
2730
DGKD_HUMAN
1186-1214
29
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1r79a_ (A:)
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Class
:
Small proteins
(3458)
Fold
:
Cysteine-rich domain
(24)
Superfamily
:
Cysteine-rich domain
(24)
Family
:
Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
(18)
Protein domain
:
Diacylglycerol kinase delta
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1r79a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1r79A01 (A:25-79)
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
[code=3.30.60.20, no name defined]
(15)
Human (Homo sapiens)
(5)
1a
1r79A01
A:25-79
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_C1_1_1r79A01 (A:28-78)
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Clan
:
C1
(13)
Family
:
C1_1
(10)
Homo sapiens (Human)
(4)
1a
C1_1-1r79A01
A:28-78
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Asymmetric Unit 1
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